{ "type": "genome", "identifier": "GCA_945925985.1", "organism": "Comamonas sp. lk", "title": "Comamonas sp. lk", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945925985.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110380175", "wgs_master": "CAMELV000000000.1", "refseq_category": "na", "taxid": "2201272", "species_taxid": "2201272", "organism_name": "Comamonas sp. lk", "infraspecific_name": "", "isolate": "MsE-30jul19-110", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "MsE-30jul19-110", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/925/985/GCA_945925985.1_MsE-30jul19-110", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Comamonas sp. lk" ], "sample_taxid": [ "2201272" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "1.212 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 85.42, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4294475", "Number of Sequences": "72", "Longest Sequences (bp)": "360365", "N50 (bp)": "100491", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.0", "Number of CDSs": "4061", "Average Protein Length": "319.7", "Coding Ratio (%)": "90.7", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Curvibacter lanceolatus", "strain": "strain=ATCC 14669", "accession": "GCA_000381265.1", "taxid": 86182, "species_taxid": 86182, "relation_to_type": "type", "validated": true, "ani": 78.3266, "matched_fragments": 395, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter gracilis", "strain": "strain=ATCC BAA-807", "accession": "GCA_000518645.1", "taxid": 230310, "species_taxid": 230310, "relation_to_type": "type", "validated": true, "ani": 78.2884, "matched_fragments": 399, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax ferrireducens", "strain": "strain=DSM 15236", "accession": "GCA_000013605.1", "taxid": 192843, "species_taxid": 192843, "relation_to_type": "type", "validated": true, "ani": 78.2142, "matched_fragments": 377, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax lacus", "strain": "strain=IMCC26218", "accession": "GCA_003415675.1", "taxid": 2184758, "species_taxid": 2184758, "relation_to_type": "type", "validated": true, "ani": 78.2085, "matched_fragments": 418, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 78.0257, "matched_fragments": 331, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga intermedia", "strain": "strain=NBRC 102510", "accession": "GCA_001571205.1", "taxid": 65786, 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true, "ani": 77.952, "matched_fragments": 320, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax antarcticus", "strain": "strain=DSM 24876", "accession": "GCA_001955735.1", "taxid": 81479, "species_taxid": 81479, "relation_to_type": "type", "validated": true, "ani": 77.9373, "matched_fragments": 280, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia beijingensis", "strain": "strain=GCS-AN-3", "accession": "GCA_013423955.1", "taxid": 1207057, "species_taxid": 1207057, "relation_to_type": "type", "validated": true, "ani": 77.9352, "matched_fragments": 325, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga intermedia", "strain": "strain=S1", "accession": "GCA_000723405.1", "taxid": 65786, "species_taxid": 65786, "relation_to_type": "type", "validated": true, "ani": 77.9254, "matched_fragments": 317, 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"strain": "strain=NBRC 14950", "accession": "GCA_001598795.1", "taxid": 80866, "species_taxid": 80866, "relation_to_type": "type", "validated": true, "ani": 77.5258, "matched_fragments": 305, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Delftia acidovorans", "strain": "strain=FDAARGOS_997", "accession": "GCA_016127415.1", "taxid": 80866, "species_taxid": 80866, "relation_to_type": "type", "validated": true, "ani": 77.5107, "matched_fragments": 314, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidimonas thermarum", "strain": "strain=AA-1", "accession": "GCA_007556705.1", "taxid": 335431, "species_taxid": 335431, "relation_to_type": "type", "validated": true, "ani": 77.4428, "matched_fragments": 226, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira psychrophila", "strain": "strain=DSM 11588", "accession": 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