{ "type": "genome", "identifier": "GCA_945948385.1", "organism": "uncultured Corynebacterium sp.", "title": "uncultured Corynebacterium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945948385.1", "bioproject": "PRJEB53600", "biosample": "SAMEA110411770", "wgs_master": "CAMFBF000000000.1", "refseq_category": "na", "taxid": "159447", "species_taxid": "159447", "organism_name": "uncultured Corynebacterium sp.", "infraspecific_name": "", "isolate": "SRR11489751_bin.3_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "SRR11489751_bin.3_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/948/385/GCA_945948385.1_SRR11489751_bin.3_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Corynebacterium sp." ], "sample_taxid": [ "159447" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.658 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 4.63, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2334028", "Number of Sequences": "320", "Longest Sequences (bp)": "29945", "N50 (bp)": "8995", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.3", "Number of CDSs": "2038", "Average Protein Length": "287.2", "Coding Ratio (%)": "75.2", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium phoceense", "strain": "strain=MC1", "accession": "GCA_900092335.1", "taxid": 1686286, "species_taxid": 1686286, "relation_to_type": "type", "validated": true, "ani": 95.3251, "matched_fragments": 548, "total_fragments": 611, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium striatum", "strain": "strain=ATCC 6940", "accession": "GCA_000159135.1", "taxid": 43770, "species_taxid": 43770, "relation_to_type": "type", "validated": true, "ani": 80.3219, "matched_fragments": 290, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium striatum", "strain": "strain=FDAARGOS_1054", "accession": "GCA_016403285.1", "taxid": 43770, "species_taxid": 43770, "relation_to_type": "type", "validated": true, "ani": 80.2004, "matched_fragments": 284, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium striatum", "strain": "strain=NCTC764", "accession": "GCA_900447675.1", "taxid": 43770, "species_taxid": 43770, "relation_to_type": "type", "validated": true, "ani": 80.187, "matched_fragments": 291, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium striatum", "strain": "strain=NBRC 15291", "accession": "GCA_006538485.1", "taxid": 43770, "species_taxid": 43770, "relation_to_type": "type", "validated": true, "ani": 80.1653, "matched_fragments": 288, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium aurimucosum", "strain": "strain=FDAARGOS_1109", "accession": "GCA_016728705.1", "taxid": 169292, "species_taxid": 169292, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0327, "matched_fragments": 253, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium tuberculostearicum", "strain": "strain=FDAARGOS_1117", "accession": "GCA_016728365.1", "taxid": 38304, "species_taxid": 38304, "relation_to_type": "type", "validated": true, "ani": 79.0131, "matched_fragments": 224, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium aurimucosum", "strain": "strain=DSM 44532", "accession": "GCA_024138775.1", "taxid": 169292, "species_taxid": 169292, "relation_to_type": "suspected-type", "validated": true, "ani": 78.996, "matched_fragments": 256, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium tuberculostearicum", "strain": "strain=DSM 44922", "accession": "GCA_013408445.1", "taxid": 38304, "species_taxid": 38304, "relation_to_type": "type", "validated": true, "ani": 78.9494, "matched_fragments": 228, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium camporealensis", "strain": "strain=DSM 44610", "accession": "GCA_000980815.1", "taxid": 161896, "species_taxid": 161896, "relation_to_type": "type", "validated": true, "ani": 78.7588, "matched_fragments": 251, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=DSM 45392", "accession": "GCA_000819445.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 78.7371, "matched_fragments": 249, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=NBRC 106098", "accession": "GCA_001571025.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 78.7181, "matched_fragments": 247, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium massiliense", "strain": "strain=DSM 45435", "accession": "GCA_000420605.1", "taxid": 441501, "species_taxid": 441501, "relation_to_type": "type", "validated": true, "ani": 78.6894, "matched_fragments": 208, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=DSM 44683", "accession": "GCA_000688435.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 78.5567, "matched_fragments": 261, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=YIM 70093 = DSM 44683", "accession": "GCA_000341345.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 78.5037, "matched_fragments": 258, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium marinum", "strain": "strain=CGMCC 1.6998", "accession": "GCA_014645275.1", "taxid": 349751, "species_taxid": 349751, "relation_to_type": "type", "validated": true, "ani": 78.3883, "matched_fragments": 229, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium frankenforstense", "strain": "strain=ST18", "accession": "GCA_001941485.1", "taxid": 1230998, "species_taxid": 1230998, "relation_to_type": "type", "validated": true, "ani": 78.3416, "matched_fragments": 235, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium senegalense", "strain": "strain=Marseille-P4329", "accession": "GCA_900411315.1", "taxid": 2080750, "species_taxid": 2080750, "relation_to_type": "type", "validated": true, "ani": 78.0939, "matched_fragments": 212, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium freneyi", "strain": "strain=DSM 44506", "accession": "GCA_017876455.1", "taxid": 134034, "species_taxid": 134034, "relation_to_type": "type", "validated": true, "ani": 77.7499, "matched_fragments": 148, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium freneyi", "strain": "strain=FDAARGOS 1426", "accession": "GCA_019047805.1", "taxid": 134034, "species_taxid": 134034, "relation_to_type": "type", "validated": true, "ani": 77.6891, "matched_fragments": 153, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium xerosis", "strain": "strain=NBRC 16721", "accession": "GCA_001552415.1", "taxid": 1725, "species_taxid": 1725, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6283, "matched_fragments": 160, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium bovis", "strain": "strain=DSM 20582", "accession": "GCA_014191555.1", "taxid": 36808, "species_taxid": 36808, "relation_to_type": "type", "validated": true, "ani": 77.2755, "matched_fragments": 124, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium bovis", "strain": "strain=FDAARGOS_1052", "accession": "GCA_016128075.1", "taxid": 36808, "species_taxid": 36808, "relation_to_type": "type", "validated": true, "ani": 77.2196, "matched_fragments": 126, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium sphenisci", "strain": "strain=DSM 44792", "accession": "GCA_001941505.1", "taxid": 191493, "species_taxid": 191493, "relation_to_type": "type", "validated": true, "ani": 76.727, "matched_fragments": 119, "total_fragments": 611, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 4.63, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900092335.1", "gtdb_species": "s__Corynebacterium phoceense", "ani": 95.3251, "matched_fragments": 548, "total_fragments": 611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.96", "min_intra_species_ani": "96.08", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 11, "status": "conclusive" }, { "accession": "GCF_000159135.1", "gtdb_species": "s__Corynebacterium striatum", "ani": 80.3421, "matched_fragments": 289, "total_fragments": 611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "95.19", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 41, "status": "-" }, { "accession": "GCF_002861385.1", "gtdb_species": "s__Corynebacterium aurimucosum_C", "ani": 79.4558, "matched_fragments": 266, "total_fragments": 611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.04", "min_intra_species_ani": "96.50", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 28, "status": "-" }, { "accession": "GCF_001815935.1", "gtdb_species": "s__Corynebacterium sp001815935", "ani": 79.3438, "matched_fragments": 294, "total_fragments": 611, "gtdb_taxonomy": 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.10", "min_intra_species_ani": "96.19", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000988205.1", "gtdb_species": "s__Corynebacterium minutissimum_A", "ani": 79.0611, "matched_fragments": 278, "total_fragments": 611, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.53", "min_intra_species_ani": "96.09", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_001812805.1", "gtdb_species": "s__Corynebacterium sp001812805", "ani": 78.9756, "matched_fragments": 246, "total_fragments": 611, "gtdb_taxonomy": 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