{ "type": "genome", "identifier": "GCA_945948965.1", "organism": "uncultured Helicobacter sp.", "title": "uncultured Helicobacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945948965.1", "bioproject": "PRJEB53600", "biosample": "SAMEA110411899", "wgs_master": "CAMFCZ000000000.1", "refseq_category": "na", "taxid": "175537", "species_taxid": "175537", "organism_name": "uncultured Helicobacter sp.", "infraspecific_name": "", "isolate": "SRR11489778_bin.3_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "SRR11489778_bin.3_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/948/965/GCA_945948965.1_SRR11489778_bin.3_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Helicobacter sp." ], "sample_taxid": [ "175537" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.296 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", 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"total_fragments": 239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter pullorum", "strain": "strain=CCUG 33837", "accession": "GCA_017979475.1", "taxid": 35818, "species_taxid": 35818, "relation_to_type": "type", "validated": true, "ani": 80.3808, "matched_fragments": 166, "total_fragments": 239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter rodentium", "strain": "strain=ATCC 700285", "accession": "GCA_000687535.1", "taxid": 59617, "species_taxid": 59617, "relation_to_type": "type", "validated": true, "ani": 78.3354, "matched_fragments": 89, "total_fragments": 239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter turcicus", "strain": "strain=Faydin-H70", "accession": "GCA_019711685.1", "taxid": 2867412, "species_taxid": 2867412, "relation_to_type": "type", "validated": true, "ani": 78.0631, "matched_fragments": 81, "total_fragments": 239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter valdiviensis", "strain": "strain=WBE14", "accession": "GCA_003245365.1", "taxid": 1458358, "species_taxid": 1458358, "relation_to_type": "type", "validated": true, "ani": 77.9629, "matched_fragments": 104, "total_fragments": 239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter burdigaliensis", "strain": "strain=CNRCH 2005/566H", "accession": "GCA_003670295.1", "taxid": 2315334, "species_taxid": 2315334, "relation_to_type": "type", "validated": true, "ani": 77.9232, "matched_fragments": 109, "total_fragments": 239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter winghamensis", "strain": "strain=ATCC BAA-430", "accession": "GCA_000158455.1", "taxid": 157268, "species_taxid": 157268, "relation_to_type": "type", "validated": true, "ani": 77.8885, "matched_fragments": 93, "total_fragments": 239, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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