{ "type": "genome", "identifier": "GCA_945965235.1", "organism": "uncultured Streptococcus sp.", "title": "uncultured Streptococcus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945965235.1", "bioproject": "PRJEB53141", "biosample": "SAMEA110426396", "wgs_master": "CAMFMY000000000.1", "refseq_category": "na", "taxid": "83427", "species_taxid": "83427", "organism_name": "uncultured Streptococcus sp.", "infraspecific_name": "", "isolate": "SRR15725430_bin.32_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/11", "asm_name": "SRR15725430_bin.32_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/965/235/GCA_945965235.1_SRR15725430_bin.32_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-11", "dateModified": "2022-09-11", "datePublished": "2022-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Streptococcus sp." ], "sample_taxid": [ "83427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.401 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1404061", "Number of Sequences": "100", "Longest Sequences (bp)": "54619", "N50 (bp)": "21932", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.2", "Number of CDSs": "1348", "Average Protein Length": "303.4", "Coding Ratio (%)": "87.4", "Number of rRNAs": "0", "Number of tRNAs": "15", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus lutetiensis", "strain": "strain=FDAARGOS_1018", "accession": "GCA_016403165.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 81.5882, "matched_fragments": 257, "total_fragments": 416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius subsp. infantarius", "strain": "strain=ATCC BAA-102", "accession": "GCA_000154985.1", "taxid": 150054, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 81.5783, "matched_fragments": 252, "total_fragments": 416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=FDAARGOS_1019", "accession": "GCA_016127275.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 81.5369, "matched_fragments": 257, "total_fragments": 416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=NCTC13760", "accession": "GCA_900459445.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 81.5019, "matched_fragments": 260, "total_fragments": 416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=FDAARGOS_1158", "accession": "GCA_016725165.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 81.5, "matched_fragments": 258, "total_fragments": 416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=NCTC13774", "accession": "GCA_900475675.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 81.4929, "matched_fragments": 261, "total_fragments": 416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gallolyticus subsp. gallolyticus", "strain": "strain=DSM 16831", "accession": "GCA_002000985.1", "taxid": 53354, "species_taxid": 315405, "relation_to_type": "type", "validated": true, "ani": 81.2262, "matched_fragments": 283, "total_fragments": 416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gallolyticus", "strain": "strain=NCTC13773", "accession": "GCA_900475715.1", "taxid": 315405, "species_taxid": 315405, "relation_to_type": "suspected-type", "validated": true, "ani": 81.1955, "matched_fragments": 277, "total_fragments": 416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vicugnae", "strain": "strain=SL1232", "accession": "GCA_016461705.1", "taxid": 2740579, "species_taxid": 2740579, "relation_to_type": "type", "validated": true, "ani": 81.0786, "matched_fragments": 239, "total_fragments": 416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equinus", "strain": "strain=NCTC12969", "accession": "GCA_900459295.1", "taxid": 1335, "species_taxid": 1335, "relation_to_type": "type", "validated": true, "ani": 80.8011, "matched_fragments": 252, "total_fragments": 416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equinus", "strain": "strain=ATCC 9812", "accession": "GCA_000187265.1", "taxid": 1335, "species_taxid": 1335, "relation_to_type": "type", "validated": true, "ani": 80.7549, "matched_fragments": 257, "total_fragments": 416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7863, "matched_fragments": 63, "total_fragments": 416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus uberis", "strain": "strain=NCTC3858", "accession": "GCA_900475595.1", "taxid": 1349, "species_taxid": 1349, "relation_to_type": "type", "validated": true, "ani": 78.442, "matched_fragments": 77, "total_fragments": 416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus halichoeri", "strain": "strain=CCUG48324", "accession": "GCA_009870755.1", "taxid": 254785, "species_taxid": 254785, "relation_to_type": "type", "validated": true, "ani": 77.6619, "matched_fragments": 59, "total_fragments": 416, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_012277075.1", "gtdb_species": "s__Streptococcus alactolyticus", "ani": 99.147, "matched_fragments": 397, "total_fragments": 416, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.29", "min_intra_species_ani": "98.88", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.83", "num_clustered_genomes": 11, "status": "conclusive" }, { "accession": "GCF_000154985.1", "gtdb_species": "s__Streptococcus infantarius", "ani": 81.6058, "matched_fragments": 251, "total_fragments": 416, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.67", "min_intra_species_ani": "95.30", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.82", "num_clustered_genomes": 24, "status": "-" }, { "accession": "GCF_900475675.1", "gtdb_species": "s__Streptococcus lutetiensis", "ani": 81.4929, "matched_fragments": 261, "total_fragments": 416, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 50, "status": "-" }, { "accession": "GCA_000283635.1", "gtdb_species": "s__Streptococcus macedonicus", "ani": 81.3484, "matched_fragments": 272, "total_fragments": 416, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 96.3165, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "98.50", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 11, "status": "-" }, { "accession": 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"Lactobacillales", "Streptococcaceae", "Streptococcus", "Streptococcus", "faecavium" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }