{ "type": "genome", "identifier": "GCA_945971245.1", "organism": "uncultured Lactobacillus sp.", "title": "uncultured Lactobacillus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945971245.1", "bioproject": "PRJEB53141", "biosample": "SAMEA110426462", "wgs_master": "CAMFOZ000000000.1", "refseq_category": "na", "taxid": "153152", "species_taxid": "153152", "organism_name": "uncultured Lactobacillus sp.", "infraspecific_name": "", "isolate": "SRR15725434_bin.18_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/11", "asm_name": "SRR15725434_bin.18_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/971/245/GCA_945971245.1_SRR15725434_bin.18_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-11", "dateModified": "2022-09-11", "datePublished": "2022-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lactobacillus sp." ], "sample_taxid": [ "153152" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.564 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 92.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1959316", "Number of Sequences": "203", "Longest Sequences (bp)": "64528", "N50 (bp)": "13870", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.8", "Number of CDSs": "1870", "Average Protein Length": "283.1", "Coding Ratio (%)": "81.0", "Number of rRNAs": "0", "Number of tRNAs": "19", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limosilactobacillus pontis", "strain": "strain=DSM 8475", "accession": "GCA_001435345.1", "taxid": 35787, "species_taxid": 35787, "relation_to_type": "type", "validated": true, "ani": 83.5033, "matched_fragments": 312, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus panis", "strain": "strain=DSM 6035", "accession": "GCA_001435935.1", "taxid": 47493, "species_taxid": 47493, "relation_to_type": "type", "validated": true, "ani": 80.0165, "matched_fragments": 182, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus panis", "strain": "strain=DSM 6035", "accession": "GCA_001027985.1", "taxid": 47493, "species_taxid": 47493, "relation_to_type": "type", "validated": true, "ani": 79.987, "matched_fragments": 179, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus antri", "strain": "strain=DSM 16041", "accession": "GCA_000160835.1", "taxid": 227943, "species_taxid": 227943, "relation_to_type": "type", "validated": true, "ani": 79.8239, "matched_fragments": 175, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus vaginalis", "strain": "strain=DSM 5837", "accession": "GCA_001435915.1", "taxid": 1633, "species_taxid": 1633, "relation_to_type": "type", "validated": true, "ani": 79.6289, "matched_fragments": 105, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus antri", "strain": "strain=DSM 16041", "accession": "GCA_001435475.1", "taxid": 227943, "species_taxid": 227943, "relation_to_type": "type", "validated": true, "ani": 79.6174, "matched_fragments": 174, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus vaginalis", "strain": "strain=ATCC 49540", "accession": "GCA_000159435.1", "taxid": 1633, "species_taxid": 1633, "relation_to_type": "type", "validated": true, "ani": 79.597, "matched_fragments": 113, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus oris", "strain": "strain=DSM 4864", "accession": "GCA_001434465.1", "taxid": 1632, "species_taxid": 1632, "relation_to_type": "type", "validated": true, "ani": 79.4737, "matched_fragments": 167, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus fastidiosus", "strain": "strain=WF-MO7-1", "accession": "GCA_014145505.1", "taxid": 2759855, "species_taxid": 2759855, "relation_to_type": "type", "validated": true, "ani": 79.2876, "matched_fragments": 91, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus portuensis", "strain": "strain=c11Ua_112_M", "accession": "GCA_014838735.1", "taxid": 2742601, "species_taxid": 2742601, "relation_to_type": "type", "validated": true, "ani": 79.0474, "matched_fragments": 103, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus urinaemulieris", "strain": "strain=c9Ua_26_M", "accession": "GCA_014838745.1", "taxid": 2742600, "species_taxid": 2742600, "relation_to_type": "type", "validated": true, "ani": 79.0399, "matched_fragments": 102, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 92.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002299975.1", "gtdb_species": "s__Limosilactobacillus sp002299975", "ani": 95.4293, "matched_fragments": 261, "total_fragments": 544, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "99.38", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_019118405.1", "gtdb_species": "s__Limosilactobacillus gallistercoris", "ani": 88.4031, "matched_fragments": 264, "total_fragments": 544, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "98.67", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_019117285.1", "gtdb_species": "s__Limosilactobacillus intestinigallinarum", "ani": 84.8507, "matched_fragments": 217, "total_fragments": 544, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001435345.1", "gtdb_species": "s__Limosilactobacillus pontis", "ani": 83.5326, "matched_fragments": 311, "total_fragments": 544, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.82", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002940945.1", "gtdb_species": "s__Limosilactobacillus pontis_A", "ani": 82.6197, "matched_fragments": 295, "total_fragments": 544, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001435935.1", "gtdb_species": "s__Limosilactobacillus panis", "ani": 80.0165, "matched_fragments": 182, "total_fragments": 544, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", 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