{ "type": "genome", "identifier": "GCA_945981175.1", "organism": "Comamonas aquatica", "title": "Comamonas aquatica", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945981175.1", "bioproject": "PRJEB53041", "biosample": "SAMEA110426277", "wgs_master": "CAMFRD000000000.1", "refseq_category": "na", "taxid": "225991", "species_taxid": "225991", "organism_name": "Comamonas aquatica", "infraspecific_name": "", "isolate": "SRR12203220_bin.2_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/11", "asm_name": "SRR12203220_bin.2_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/981/175/GCA_945981175.1_SRR12203220_bin.2_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-11", "dateModified": "2022-09-11", "datePublished": "2022-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Comamonas aquatica" ], "sample_taxid": [ "225991" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.949 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3367580", "Number of Sequences": "109", "Longest Sequences (bp)": "143913", "N50 (bp)": "45436", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.7", "Number of CDSs": "3089", "Average Protein Length": "315.4", "Coding Ratio (%)": "86.8", "Number of rRNAs": "1", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Comamonas kerstersii", "strain": "strain=CCUG 15333", "accession": "GCA_008801935.1", "taxid": 225992, "species_taxid": 225992, "relation_to_type": "type", "validated": true, "ani": 98.8453, "matched_fragments": 973, "total_fragments": 1069, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Comamonas aquatica", "strain": "strain=NBRC 14918", "accession": "GCA_000739875.1", "taxid": 225991, "species_taxid": 225991, "relation_to_type": "type", "validated": true, "ani": 82.7512, "matched_fragments": 740, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas avium", "strain": "strain=Sa2CVA6", "accession": "GCA_014836675.1", "taxid": 2762231, "species_taxid": 2762231, "relation_to_type": "type", "validated": true, "ani": 81.355, "matched_fragments": 680, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas terrigena", "strain": "strain=NCTC1937", "accession": "GCA_900461435.1", "taxid": 32013, "species_taxid": 32013, "relation_to_type": "type", "validated": true, "ani": 81.1365, "matched_fragments": 649, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas fluminis", "strain": "strain=CJ34", "accession": "GCA_019186805.1", "taxid": 2796366, "species_taxid": 2796366, "relation_to_type": "type", "validated": true, "ani": 80.7098, "matched_fragments": 566, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas testosteroni", "strain": "strain=ATCC 11996", "accession": "GCA_000241525.2", "taxid": 285, "species_taxid": 285, "relation_to_type": "suspected-type", "validated": true, "ani": 80.5494, "matched_fragments": 576, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas testosteroni", "strain": "strain=NCTC10698", "accession": "GCA_900461225.1", "taxid": 285, "species_taxid": 285, "relation_to_type": "suspected-type", "validated": true, "ani": 80.5438, "matched_fragments": 585, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_000964545.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 80.4777, "matched_fragments": 569, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas suwonensis", "strain": "strain=EJ-4", "accession": "GCA_012844455.2", "taxid": 2606214, "species_taxid": 2606214, "relation_to_type": "type", "validated": true, "ani": 80.1395, "matched_fragments": 535, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 79.5826, "matched_fragments": 457, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 79.1872, "matched_fragments": 449, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 78.1203, "matched_fragments": 319, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008801935.1", "gtdb_species": "s__Comamonas kerstersii", "ani": 98.8453, "matched_fragments": 973, "total_fragments": 1069, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.88", "min_intra_species_ani": "98.82", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCF_000739875.1", "gtdb_species": "s__Comamonas aquatica", "ani": 82.759, "matched_fragments": 739, "total_fragments": 1069, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.97", "min_intra_species_ani": "96.57", "mean_intra_species_af": 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