<?xml version="1.0" ?>
<BioSampleSet><BioSample access="public" publication_date="2022-07-28T00:00:00.000" last_update="2022-08-01T23:13:52.000" submission_date="2022-07-29T08:29:18.056" id="30039634" accession="SAMEA110426280">   <Ids>     <Id db="BioSample" is_primary="1">SAMEA110426280</Id>     <Id db="SRA">ERS12524206</Id>   </Ids>   <Description>     <Title>Metagenome-assembled genome: SRR12203223_bin.1_metaWRAP_v1.3_MAG</Title>     <Organism taxonomy_id="237777" taxonomy_name="uncultured Escherichia sp.">       <OrganismName>uncultured Escherichia sp.</OrganismName>     </Organism>     <Comment>       <Paragraph>This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12203223 of study SRP271464.</Paragraph>     </Comment>   </Description>   <Owner>     <Name>EBI</Name>   </Owner>   <Models>     <Model>Generic</Model>   </Models>   <Package display_name="Generic">Generic.1.0</Package>   <Attributes>     <Attribute attribute_name="ENA-CHECKLIST">ERC000047</Attribute>     <Attribute attribute_name="ENA-FIRST-PUBLIC">2022-07-28</Attribute>     <Attribute attribute_name="ENA-LAST-UPDATE">2022-07-28</Attribute>     <Attribute attribute_name="External Id">SAMEA110426280</Attribute>     <Attribute attribute_name="INSDC center alias">EMG</Attribute>     <Attribute attribute_name="INSDC center name">EMG</Attribute>     <Attribute attribute_name="INSDC first public">2022-07-28T16:25:47Z</Attribute>     <Attribute attribute_name="INSDC last update">2022-07-28T16:25:47Z</Attribute>     <Attribute attribute_name="INSDC status">public</Attribute>     <Attribute attribute_name="Submitter Id">SRR12203223_bin.1_metaWRAP_v1.3_MAG</Attribute>     <Attribute attribute_name="assembly quality">Many fragments with little to no review of assembly other than reporting of standard assembly statistics</Attribute>     <Attribute attribute_name="assembly software">megahit v1.2.9</Attribute>     <Attribute attribute_name="binning parameters">MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.</Attribute>     <Attribute attribute_name="binning software">metaWRAP v1.3</Attribute>     <Attribute attribute_name="broad-scale environmental context" harmonized_name="env_broad_scale" display_name="broad-scale environmental context">Pig digestive system</Attribute>     <Attribute attribute_name="broker name">EMG broker account, EMBL-EBI</Attribute>     <Attribute attribute_name="collection date" harmonized_name="collection_date" display_name="collection date">not provided</Attribute>     <Attribute attribute_name="completeness score">54.94</Attribute>     <Attribute attribute_name="completeness software">CheckM</Attribute>     <Attribute attribute_name="contamination score">0.69</Attribute>     <Attribute attribute_name="environmental medium" harmonized_name="env_medium" display_name="environmental medium">Feces</Attribute>     <Attribute attribute_name="geographic location (country and/or sea)" harmonized_name="geo_loc_name" display_name="geographic location">USA</Attribute>     <Attribute attribute_name="geographic location (latitude)">39.8687</Attribute>     <Attribute attribute_name="geographic location (longitude)">-75.7547</Attribute>     <Attribute attribute_name="investigation type" harmonized_name="investigation_type" display_name="investigation type">metagenome-assembled genome</Attribute>     <Attribute attribute_name="isolation_source" harmonized_name="isolation_source" display_name="isolation source">pig gut metagenome</Attribute>     <Attribute attribute_name="local environmental context">Intestine</Attribute>     <Attribute attribute_name="metagenomic source">pig gut metagenome</Attribute>     <Attribute attribute_name="project name" harmonized_name="project_name" display_name="project name">Shotgun metagenomic sequencing of fecal samples collected from 18 pregnant sows at days 37 (beginning) and 114 (immediately pre-farrowing) of pregnancy reveal that parity is associated with changes in the porcine gut microbiome at the end, and not the beginning, of pregnancy. Shotgun metagenomic sequencing of fecal swabs from 3 offspring from each mother 10 days after birth reveals that maternal parity is associated with the early infant gut microbiome composition.</Attribute>     <Attribute attribute_name="sample derived from">SAMN15497282</Attribute>     <Attribute attribute_name="sample name" harmonized_name="sample_name" display_name="sample name">SRR12203223_bin.1_metaWRAP_v1.3_MAG</Attribute>     <Attribute attribute_name="sequencing method">NextSeq 500</Attribute>     <Attribute attribute_name="taxonomic classification">The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__</Attribute>     <Attribute attribute_name="taxonomic identity marker">multi-marker approach</Attribute>   </Attributes>   <Status status="live" when="2022-07-30T08:22:18.990"/> </BioSample> </BioSampleSet>
