{ "type": "genome", "identifier": "GCA_945992195.1", "organism": "uncultured Oribacterium sp.", "title": "uncultured Oribacterium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945992195.1", "bioproject": "PRJEB53041", "biosample": "SAMEA110426259", "wgs_master": "CAMFVN000000000.1", "refseq_category": "na", "taxid": "462198", "species_taxid": "462198", "organism_name": "uncultured Oribacterium sp.", "infraspecific_name": "", "isolate": "SRR12203212_bin.1_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/11", "asm_name": "SRR12203212_bin.1_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/992/195/GCA_945992195.1_SRR12203212_bin.1_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-11", "dateModified": "2022-09-11", "datePublished": "2022-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Oribacterium sp." ], "sample_taxid": [ "462198" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.557 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 6.25, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1953209", "Number of Sequences": "222", "Longest Sequences (bp)": "38844", "N50 (bp)": "12100", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.8", "Number of CDSs": "1534", "Average Protein Length": "333.8", "Coding Ratio (%)": "78.7", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 95.83, "contamination": 6.25, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_004554245.1", "gtdb_species": "s__Oribacterium sp004554245", "ani": 99.1567, "matched_fragments": 495, "total_fragments": 542, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.82", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_900770445.1", "gtdb_species": "s__Oribacterium sp900770445", "ani": 93.9796, "matched_fragments": 456, "total_fragments": 542, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900772695.1", "gtdb_species": "s__Oribacterium sp900772695", "ani": 92.3947, "matched_fragments": 356, "total_fragments": 542, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002431355.1", "gtdb_species": "s__Oribacterium sp002431355", "ani": 81.7518, "matched_fragments": 339, "total_fragments": 542, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.25", "min_intra_species_ani": "99.25", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002007235.1", "gtdb_species": "s__Oribacterium sp002007235", "ani": 78.2944, "matched_fragments": 109, "total_fragments": 542, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900315665.1", "gtdb_species": "s__Oribacterium sp900315665", "ani": 78.0368, "matched_fragments": 139, "total_fragments": 542, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "99.08", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_000513555.1", "gtdb_species": "s__Oribacterium sp000513555", "ani": 77.7964, "matched_fragments": 126, "total_fragments": 542, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 2629409.0, "gc_content": 43.0, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Oribacterium", "s__Oribacterium sp004554245" ], "_genome_taxon": [ "uncultured", "Oribacterium", "sp.", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Oribacterium", "s__Oribacterium sp004554245", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Oribacterium", "Oribacterium", "sp004554245" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }