{ "type": "genome", "identifier": "GCA_946221825.1", "organism": "uncultured Nesterenkonia sp.", "title": "uncultured Nesterenkonia sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "NIH/NHGRI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_946221825.1", "bioproject": "PRJEB47281", "biosample": "SAMEA110089139", "wgs_master": "CAMINA000000000.1", "refseq_category": "na", "taxid": "417363", "species_taxid": "417363", "organism_name": "uncultured Nesterenkonia sp.", "infraspecific_name": "", "isolate": "rLcxdbAhAR_bin.25.MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/12", "asm_name": "rLcxdbAhAR_bin.25.MAG", "submitter": "NIH/NHGRI", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/221/825/GCA_946221825.1_rLcxdbAhAR_bin.25.MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-12", "dateModified": "2022-09-12", "datePublished": "2022-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Nesterenkonia sp." ], "sample_taxid": [ "417363" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.587 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 69.49, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2083736", "Number of Sequences": "582", "Longest Sequences (bp)": "42992", "N50 (bp)": "5573", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.0", "Number of CDSs": "1512", "Average Protein Length": "303.6", "Coding Ratio (%)": "66.1", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nesterenkonia lacusekhoensis", "strain": "strain=DSM 12544", "accession": "GCA_017876395.1", "taxid": 150832, "species_taxid": 150832, "relation_to_type": "type", "validated": true, "ani": 93.6422, "matched_fragments": 369, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia cremea", "strain": "strain=CGMCC 1.15388", "accession": "GCA_014642675.1", "taxid": 1882340, "species_taxid": 1882340, "relation_to_type": "type", "validated": true, "ani": 89.2474, "matched_fragments": 362, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia xinjiangensis", "strain": "strain=DSM 15475", "accession": "GCA_013410745.1", "taxid": 225327, "species_taxid": 225327, "relation_to_type": "type", "validated": true, "ani": 79.8114, "matched_fragments": 217, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia sandarakina", "strain": "strain=DSM 15664", "accession": "GCA_013410215.1", "taxid": 272918, "species_taxid": 272918, "relation_to_type": "type", "validated": true, "ani": 79.7868, "matched_fragments": 213, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia lutea", "strain": "strain=DSM 15666", "accession": "GCA_014873955.1", "taxid": 272919, "species_taxid": 272919, "relation_to_type": "type", "validated": true, "ani": 79.5834, "matched_fragments": 199, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia alkaliphila", "strain": "strain=F10", "accession": "GCA_009758175.1", "taxid": 1463631, "species_taxid": 1463631, "relation_to_type": "type", "validated": true, "ani": 79.5388, "matched_fragments": 199, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia jeotgali", "strain": "strain=DSM 19081", "accession": "GCA_014138825.1", "taxid": 317018, "species_taxid": 317018, "relation_to_type": "type", "validated": true, "ani": 79.5174, "matched_fragments": 216, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia alkaliphila", "strain": "strain=CGMCC 1.12781", "accession": "GCA_014639295.1", "taxid": 1463631, "species_taxid": 1463631, "relation_to_type": "type", "validated": true, "ani": 79.505, "matched_fragments": 200, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia sedimenti", "strain": "strain=MY13", "accession": "GCA_012641515.1", "taxid": 1463632, "species_taxid": 1463632, "relation_to_type": "type", "validated": true, "ani": 79.3338, "matched_fragments": 175, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia halotolerans", "strain": "strain=DSM 15474", "accession": "GCA_014874065.1", "taxid": 225325, "species_taxid": 225325, "relation_to_type": "type", "validated": true, "ani": 79.1997, "matched_fragments": 204, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Garicola koreensis", "strain": "strain=DSM 28238", "accession": "GCA_014195445.1", "taxid": 1262554, "species_taxid": 1262554, "relation_to_type": "type", "validated": true, "ani": 78.7619, "matched_fragments": 162, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia ebinurensis", "strain": "strain=MD2", "accession": "GCA_008711175.1", 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