{ "type": "genome", "identifier": "GCA_946402285.1", "organism": "uncultured Dorea sp.", "title": "uncultured Dorea sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_946402285.1", "bioproject": "PRJEB54957", "biosample": "SAMEA110653543", "wgs_master": "CAMIWB000000000.1", "refseq_category": "na", "taxid": "286138", "species_taxid": "286138", "organism_name": "uncultured Dorea sp.", "infraspecific_name": "", "isolate": "SRR14812341_bin.18_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/12", "asm_name": "SRR14812341_bin.18_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/402/285/GCA_946402285.1_SRR14812341_bin.18_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-12", "dateModified": "2022-09-12", "datePublished": "2022-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Dorea sp." ], "sample_taxid": [ "286138" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.781 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 59.09, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2735811", "Number of Sequences": "380", "Longest Sequences (bp)": "33673", "N50 (bp)": "8794", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.4", "Number of CDSs": "2420", "Average Protein Length": "299.2", "Coding Ratio (%)": "79.4", "Number of rRNAs": "0", "Number of tRNAs": "19", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dorea longicatena", "strain": "strain=DSM 13814", "accession": "GCA_025150085.1", "taxid": 88431, "species_taxid": 88431, "relation_to_type": "type", "validated": true, "ani": 78.3462, "matched_fragments": 173, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] scindens", "strain": "strain=ATCC 35704", "accession": "GCA_000154505.1", "taxid": 29347, "species_taxid": 29347, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3183, "matched_fragments": 236, 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"below_threshold" }, { "organism_name": "Dorea formicigenerans", "strain": "strain=ATCC 27755", "accession": "GCA_025150245.1", "taxid": 39486, "species_taxid": 39486, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6582, "matched_fragments": 119, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea formicigenerans", "strain": "strain=ATCC 27755", "accession": "GCA_000169235.1", "taxid": 39486, "species_taxid": 39486, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6302, "matched_fragments": 121, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporofaciens musculi", "strain": "strain=WCA-9-b2", "accession": "GCA_009830285.1", "taxid": 2681861, "species_taxid": 2681861, "relation_to_type": "type", "validated": true, "ani": 77.5632, "matched_fragments": 191, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Merdimonas faecis", "strain": "strain=BR31", "accession": "GCA_001754075.1", "taxid": 1653435, "species_taxid": 1653435, "relation_to_type": "type", "validated": true, "ani": 77.5631, "matched_fragments": 128, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_025152275.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "type", "validated": true, "ani": 77.2278, "matched_fragments": 74, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_002959615.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1918, "matched_fragments": 76, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=JCM6515", "accession": "GCA_008121495.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1895, "matched_fragments": 76, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_000169475.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 77.164, "matched_fragments": 77, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_025152405.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 76.972, "matched_fragments": 75, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus comes", "strain": "strain=ATCC 27758", "accession": "GCA_025149785.1", "taxid": 410072, 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