{ "type": "genome", "identifier": "GCA_946476745.1", "organism": "Bifidobacterium asteroides", "title": "Bifidobacterium asteroides", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_946476745.1", "bioproject": "PRJEB55076", "biosample": "SAMEA110697423", "wgs_master": "CAMKVS000000000.1", "refseq_category": "na", "taxid": "1684", "species_taxid": "1684", "organism_name": "Bifidobacterium asteroides", "infraspecific_name": "", "isolate": "SRR10810031_bin.4_metawrap_v1.3.0_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/12", "asm_name": "SRR10810031_bin.4_metawrap_v1.3.0_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/476/745/GCA_946476745.1_SRR10810031_bin.4_metawrap_v1.3.0_MAG", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-12", "dateModified": "2022-09-12", "datePublished": "2022-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium asteroides" ], "sample_taxid": [ "1684" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "0.419 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 54.55, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1480553", "Number of Sequences": "85", "Longest Sequences (bp)": "79369", "N50 (bp)": "24298", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.7", "Number of CDSs": "1102", "Average Protein Length": "365.6", "Coding Ratio (%)": "81.6", "Number of rRNAs": "0", "Number of tRNAs": "24", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium choladohabitans", "strain": "strain=B14384H11", "accession": "GCA_016102005.1", "taxid": 2750947, "species_taxid": 2750947, "relation_to_type": "type", "validated": true, "ani": 94.9678, "matched_fragments": 440, "total_fragments": 452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium asteroides", "strain": "strain=DSM 20089", "accession": "GCA_002715865.1", "taxid": 1684, "species_taxid": 1684, "relation_to_type": "suspected-type", "validated": true, "ani": 92.0917, "matched_fragments": 404, "total_fragments": 452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium apousia", "strain": "strain=W8102", "accession": "GCA_007559275.1", "taxid": 2750996, "species_taxid": 2750996, "relation_to_type": "type", "validated": true, "ani": 92.0619, "matched_fragments": 388, "total_fragments": 452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium asteroides", "strain": "strain=DSM 20089", "accession": "GCA_000771125.1", "taxid": 1684, "species_taxid": 1684, "relation_to_type": "suspected-type", "validated": true, "ani": 91.948, "matched_fragments": 399, "total_fragments": 452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium polysaccharolyticum", "strain": "strain=W8117", "accession": "GCA_016101585.1", "taxid": 2750967, "species_taxid": 2750967, "relation_to_type": "type", "validated": true, "ani": 91.8042, "matched_fragments": 409, "total_fragments": 452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium mizhiense", "strain": "strain=S053-2", "accession": "GCA_020884755.1", "taxid": 2879940, "species_taxid": 2879940, "relation_to_type": "type", "validated": true, "ani": 91.764, "matched_fragments": 393, "total_fragments": 452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium miconisargentati", "strain": "strain=82T25", "accession": "GCA_019331675.1", "taxid": 2834437, "species_taxid": 2834437, "relation_to_type": "type", "validated": true, "ani": 77.933, "matched_fragments": 127, "total_fragments": 452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum", "strain": "strain=ATCC 25526", "accession": "GCA_022691205.1", "taxid": 31954, "species_taxid": 1694, "relation_to_type": "type", "validated": true, "ani": 76.6418, "matched_fragments": 59, "total_fragments": 452, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 54.55, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000967265.1", "gtdb_species": "s__Bifidobacterium asteroides_A", "ani": 96.8973, "matched_fragments": 434, "total_fragments": 452, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.98", "min_intra_species_ani": "96.98", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_016100725.1", "gtdb_species": "s__Bifidobacterium sp016100725", "ani": 94.4291, "matched_fragments": 430, "total_fragments": 452, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.87", "min_intra_species_ani": "96.39", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_009683175.1", "gtdb_species": "s__Bifidobacterium asteroides_H", "ani": 94.3958, "matched_fragments": 415, "total_fragments": 452, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000499285.1", "gtdb_species": "s__Bifidobacterium sp000499285", "ani": 93.3277, "matched_fragments": 421, "total_fragments": 452, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000967185.1", "gtdb_species": "s__Bifidobacterium asteroides_B", "ani": 92.5634, "matched_fragments": 388, "total_fragments": 452, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.60", "min_intra_species_ani": "95.51", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002715865.1", "gtdb_species": "s__Bifidobacterium asteroides", "ani": 92.0917, "matched_fragments": 404, "total_fragments": 452, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "97.73", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_003202755.1", "gtdb_species": "s__Bifidobacterium asteroides_F", "ani": 91.9971, "matched_fragments": 396, "total_fragments": 452, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003202715.1", "gtdb_species": "s__Bifidobacterium asteroides_E", "ani": 91.9231, "matched_fragments": 409, "total_fragments": 452, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.91", 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