{
    "type": "genome",
    "identifier": "GCA_946476815.1",
    "organism": "Gilliamella apicola",
    "title": "Gilliamella apicola",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_946476815.1",
        "bioproject": "PRJEB55158",
        "biosample": "SAMEA110697472",
        "wgs_master": "CAMKVV000000000.1",
        "refseq_category": "na",
        "taxid": "1196095",
        "species_taxid": "1196095",
        "organism_name": "Gilliamella apicola",
        "infraspecific_name": "",
        "isolate": "SRR10914160_bin.13_metawrap_v1.3.0_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/12",
        "asm_name": "SRR10914160_bin.13_metawrap_v1.3.0_MAG",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/476/815/GCA_946476815.1_SRR10914160_bin.13_metawrap_v1.3.0_MAG",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-12",
    "dateModified": "2022-09-12",
    "datePublished": "2022-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gilliamella apicola"
        ],
        "sample_taxid": [
            "1196095"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.591 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 45.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2082665",
        "Number of Sequences": "81",
        "Longest Sequences (bp)": "93687",
        "N50 (bp)": "34839",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.4",
        "Number of CDSs": "1787",
        "Average Protein Length": "332.1",
        "Coding Ratio (%)": "85.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "11",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Gilliamella apicola",
                "strain": "strain=DSM 104097",
                "accession": "GCA_003201455.1",
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                "species_taxid": 1196095,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.8709,
                "matched_fragments": 347,
                "total_fragments": 653,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella apicola",
                "strain": "strain=wkB1",
                "accession": "GCA_000599985.1",
                "taxid": 1196095,
                "species_taxid": 1196095,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 354,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella intestini",
                "strain": "strain=R-53144",
                "accession": "GCA_900094935.1",
                "taxid": 1798183,
                "species_taxid": 1798183,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7331,
                "matched_fragments": 327,
                "total_fragments": 653,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella bombicola",
                "strain": "strain=R-53248",
                "accession": "GCA_900094945.1",
                "taxid": 1798182,
                "species_taxid": 1798182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7241,
                "matched_fragments": 307,
                "total_fragments": 653,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella apis",
                "strain": "strain=NO3",
                "accession": "GCA_002142155.1",
                "taxid": 1970738,
                "species_taxid": 1970738,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6214,
                "matched_fragments": 336,
                "total_fragments": 653,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 45.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_001690185.1",
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                "matched_fragments": 637,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001693745.1",
                "gtdb_species": "s__Gilliamella apicola_E",
                "ani": 79.6308,
                "matched_fragments": 325,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "97.90",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001693755.1",
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                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.98",
                "min_intra_species_ani": "98.98",
                "mean_intra_species_af": "0.93",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009795845.1",
                "gtdb_species": "s__Gilliamella sp009795845",
                "ani": 79.007,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "num_clustered_genomes": 21,
                "status": "-"
            },
            {
                "accession": "GCF_001690495.1",
                "gtdb_species": "s__Gilliamella apicola_G",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "mean_intra_species_ani": "99.43",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_009795885.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_001690595.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_900094945.1",
                "gtdb_species": "s__Gilliamella bombicola",
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                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "mean_intra_species_ani": "98.14",
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                "status": "-"
            },
            {
                "accession": "GCF_900103085.1",
                "gtdb_species": "s__Gilliamella mensalis",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_001693435.1",
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                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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            },
            {
                "accession": "GCF_002142155.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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            {
                "accession": "GCF_002142215.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "accession": "GCF_009795805.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "accession": "GCF_003202915.1",
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            },
            {
                "accession": "GCF_003202775.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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    "_bac2feature": {
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    "_gtdb_taxon": [
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    ],
    "_genome_taxon": [
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        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae",
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        "s__Gilliamella apicola_I",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Enterobacterales",
        "Enterobacteriaceae",
        "Gilliamella",
        "Gilliamella",
        "apicola",
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    ],
    "_meo": [
        {
            "id": "MEO_0000468",
            "label": "gut"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}