{
    "type": "genome",
    "identifier": "GCA_946477145.1",
    "organism": "Bombella intestini",
    "title": "Bombella intestini",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_946477145.1",
        "bioproject": "PRJEB55158",
        "biosample": "SAMEA110697474",
        "wgs_master": "CAMKWL000000000.1",
        "refseq_category": "na",
        "taxid": "1539051",
        "species_taxid": "1539051",
        "organism_name": "Bombella intestini",
        "infraspecific_name": "",
        "isolate": "SRR10914160_bin.2_metawrap_v1.3.0_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/12",
        "asm_name": "SRR10914160_bin.2_metawrap_v1.3.0_MAG",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/477/145/GCA_946477145.1_SRR10914160_bin.2_metawrap_v1.3.0_MAG",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-12",
    "dateModified": "2022-09-12",
    "datePublished": "2022-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bombella intestini"
        ],
        "sample_taxid": [
            "1539051"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.567 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1994621",
        "Number of Sequences": "10",
        "Longest Sequences (bp)": "764117",
        "N50 (bp)": "385874",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.4",
        "Number of CDSs": "1789",
        "Average Protein Length": "332.9",
        "Coding Ratio (%)": "89.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Bombella favorum",
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                "accession": "GCA_014048475.1",
                "taxid": 2039164,
                "species_taxid": 2039164,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.9569,
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                "total_fragments": 660,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bombella intestini",
                "strain": "strain=R-52487",
                "accession": "GCA_002003665.1",
                "taxid": 1539051,
                "species_taxid": 1539051,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.1933,
                "matched_fragments": 631,
                "total_fragments": 660,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bombella apis",
                "strain": "strain=MRM1",
                "accession": "GCA_014878255.1",
                "taxid": 1785988,
                "species_taxid": 1785988,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3373,
                "matched_fragments": 530,
                "total_fragments": 660,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bombella apis",
                "strain": "strain=MRM1",
                "accession": "GCA_018221685.1",
                "taxid": 1785988,
                "species_taxid": 1785988,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3068,
                "matched_fragments": 527,
                "total_fragments": 660,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gluconobacter oxydans",
                "strain": "strain=NBRC 14819",
                "accession": "GCA_006539685.1",
                "taxid": 442,
                "species_taxid": 442,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5534,
                "matched_fragments": 75,
                "total_fragments": 660,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gluconobacter potus",
                "strain": "strain=LMG 1764",
                "accession": "GCA_001580675.1",
                "taxid": 2724927,
                "species_taxid": 2724927,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5501,
                "matched_fragments": 69,
                "total_fragments": 660,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acetobacter papayae",
                "strain": "strain=JCM 25143",
                "accession": "GCA_000613285.1",
                "taxid": 1076592,
                "species_taxid": 1076592,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5619,
                "matched_fragments": 51,
                "total_fragments": 660,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asaia lannensis",
                "strain": "strain=NBRC 102526",
                "accession": "GCA_024054035.1",
                "taxid": 415421,
                "species_taxid": 415421,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.45,
                "matched_fragments": 58,
                "total_fragments": 660,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014048475.1",
                "gtdb_species": "s__Bombella favorum",
                "ani": 98.9569,
                "matched_fragments": 638,
                "total_fragments": 660,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Bombella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002003665.1",
                "gtdb_species": "s__Bombella intestini",
                "ani": 94.1933,
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                "total_fragments": 660,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Bombella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018221685.1",
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                "ani": 83.3068,
                "matched_fragments": 527,
                "total_fragments": 660,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Bombella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "98.65",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_014048465.1",
                "gtdb_species": "s__Bombella mellum",
                "ani": 82.5681,
                "matched_fragments": 474,
                "total_fragments": 660,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Bombella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009725755.1",
                "gtdb_species": "s__Bombella sp009725755",
                "ani": 78.5373,
                "matched_fragments": 255,
                "total_fragments": 660,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Bombella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.22",
                "min_intra_species_ani": "99.22",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002592045.1",
                "gtdb_species": "s__Bombella apium_A",
                "ani": 78.4343,
                "matched_fragments": 259,
                "total_fragments": 660,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Bombella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Acetobacterales",
        "f__Acetobacteraceae",
        "g__Bombella",
        "s__Bombella favorum"
    ],
    "_genome_taxon": [
        "Bombella",
        "intestini",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Acetobacterales",
        "f__Acetobacteraceae",
        "g__Bombella",
        "s__Bombella favorum",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Acetobacterales",
        "Acetobacteraceae",
        "Bombella",
        "Bombella",
        "favorum"
    ],
    "_meo": [
        {
            "id": "MEO_0000468",
            "label": "gut"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}