{ "type": "genome", "identifier": "GCA_946477295.1", "organism": "Enterobacter ludwigii", "title": "Enterobacter ludwigii", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_946477295.1", "bioproject": "PRJEB52935", "biosample": "SAMEA110697565", "wgs_master": "CAMKXV000000000.1", "refseq_category": "na", "taxid": "299767", "species_taxid": "299767", "organism_name": "Enterobacter ludwigii", "infraspecific_name": "", "isolate": "SRR7287247_bin.1_metawrap_v1.3.0_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/15", "asm_name": "SRR7287247_bin.1_metawrap_v1.3.0_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/477/295/GCA_946477295.1_SRR7287247_bin.1_metawrap_v1.3.0_MAG", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-15", "dateModified": "2022-09-15", "datePublished": "2022-09-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterobacter ludwigii" ], "sample_taxid": [ "299767" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.640 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 47.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2229639", "Number of Sequences": "104", "Longest Sequences (bp)": "101127", "N50 (bp)": "29113", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.8", "Number of CDSs": "2027", "Average Protein Length": "309.7", "Coding Ratio (%)": "84.5", "Number of rRNAs": "1", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterobacter ludwigii", "strain": "strain=EN-119", "accession": "GCA_000818595.1", "taxid": 299767, "species_taxid": 299767, "relation_to_type": "type", "validated": true, "ani": 98.6893, "matched_fragments": 653, "total_fragments": 685, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter ludwigii", "strain": "strain=FDAARGOS 1436", "accession": "GCA_019047005.1", "taxid": 299767, "species_taxid": 299767, "relation_to_type": "type", "validated": true, "ani": 98.6569, "matched_fragments": 652, "total_fragments": 685, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter ludwigii", "strain": "strain=EN-119", "accession": "GCA_001750725.1", "taxid": 299767, "species_taxid": 299767, "relation_to_type": "type", "validated": true, "ani": 98.6521, "matched_fragments": 654, "total_fragments": 685, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter asburiae", "strain": "strain=ATCC 35953", "accession": "GCA_001521715.1", "taxid": 61645, "species_taxid": 61645, "relation_to_type": "type", "validated": true, "ani": 88.5222, "matched_fragments": 538, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter vonholyi", "strain": "strain=E13", "accession": "GCA_008364555.1", "taxid": 2797505, "species_taxid": 2797505, "relation_to_type": "type", "validated": true, "ani": 88.137, "matched_fragments": 539, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter chengduensis", "strain": "strain=WCHECl-C4 = WCHECh050004", "accession": "GCA_001984825.2", "taxid": 2494701, "species_taxid": 2494701, "relation_to_type": "type", "validated": true, "ani": 87.9897, "matched_fragments": 548, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter kobei", "strain": "strain=DSM 13645", "accession": "GCA_001729765.1", "taxid": 208224, "species_taxid": 208224, "relation_to_type": "type", "validated": true, "ani": 87.8306, "matched_fragments": 543, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter oligotrophicus", "strain": "strain=CCA6", "accession": "GCA_009176645.1", "taxid": 2478464, "species_taxid": 2478464, "relation_to_type": "type", "validated": true, "ani": 87.045, "matched_fragments": 521, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 86.8916, "matched_fragments": 533, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 47.92, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001750725.1", "gtdb_species": "s__Enterobacter ludwigii", "ani": 98.6893, "matched_fragments": 653, "total_fragments": 685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.47", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.83", "num_clustered_genomes": 88, "status": "conclusive" }, { "accession": "GCF_003634515.1", "gtdb_species": "s__Enterobacter asburiae_A", "ani": 88.5359, "matched_fragments": 544, "total_fragments": 685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 96.0274, "mean_intra_species_ani": "97.62", "min_intra_species_ani": "96.46", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_004402045.1", "gtdb_species": "s__Enterobacter nimipressuralis_A", "ani": 88.4388, "matched_fragments": 560, "total_fragments": 685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008364625.1", "gtdb_species": "s__Enterobacter dykesii", "ani": 88.4145, "matched_fragments": 544, "total_fragments": 685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 96.5795, "mean_intra_species_ani": "99.13", "min_intra_species_ani": "97.97", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_008080435.1", "gtdb_species": "s__Enterobacter asburiae_C", "ani": 88.3919, "matched_fragments": 553, "total_fragments": 685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.5575, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007035645.1", "gtdb_species": "s__Enterobacter asburiae_B", "ani": 88.3475, "matched_fragments": 551, "total_fragments": 685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 96.8818, "mean_intra_species_ani": "98.31", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 70, "status": "-" }, { "accession": "GCF_008364555.1", "gtdb_species": "s__Enterobacter vonholyi", "ani": 88.1269, "matched_fragments": 540, "total_fragments": 685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.34", "min_intra_species_ani": "98.09", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_001729805.1", "gtdb_species": "s__Enterobacter roggenkampii", "ani": 88.0985, "matched_fragments": 564, "total_fragments": 685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.21", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 197, "status": "-" }, { "accession": "GCF_003046225.1", "gtdb_species": "s__Enterobacter cloacae_I", "ani": 88.0846, "matched_fragments": 529, "total_fragments": 685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.61", "min_intra_species_ani": "95.47", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_001984825.2", "gtdb_species": "s__Enterobacter chengduensis", "ani": 88.0065, "matched_fragments": 547, "total_fragments": 685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.11", "min_intra_species_ani": "95.58", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.79", "num_clustered_genomes": 24, "status": "-" }, { "accession": "GCF_011754535.1", "gtdb_species": "s__Enterobacter cloacae_N", "ani": 87.9603, "matched_fragments": 548, "total_fragments": 685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.03", "min_intra_species_ani": "98.99", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001729765.1", "gtdb_species": "s__Enterobacter kobei", "ani": 87.8306, "matched_fragments": 543, "total_fragments": 685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.45", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 141, "status": "-" }, { "accession": "GCF_000211415.1", "gtdb_species": "s__Enterobacter mori", "ani": 87.0817, "matched_fragments": 536, "total_fragments": 685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.59", "min_intra_species_ani": "96.13", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 23, "status": "-" }, { "accession": "GCF_009176645.1", "gtdb_species": "s__Enterobacter oligotrophicus", "ani": 87.045, "matched_fragments": 521, "total_fragments": 685, 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"Enterobacteriaceae", "Enterobacter", "Enterobacter", "ludwigii" ], "_meo": [ { "id": "MEO_0000468", "label": "gut" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }