{ "type": "genome", "identifier": "GCA_946477515.1", "organism": "Parasaccharibacter apium", "title": "Parasaccharibacter apium", "description": "contaminated; derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_946477515.1", "bioproject": "PRJEB55158", "biosample": "SAMEA110697488", "wgs_master": "CAMKYO000000000.1", "refseq_category": "na", "taxid": "1510841", "species_taxid": "1510841", "organism_name": "Parasaccharibacter apium", "infraspecific_name": "", "isolate": "SRR10914163_bin.8_metawrap_v1.3.0_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/13", "asm_name": "SRR10914163_bin.8_metawrap_v1.3.0_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/477/515/GCA_946477515.1_SRR10914163_bin.8_metawrap_v1.3.0_MAG", "excluded_from_refseq": "contaminated; derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-13", "dateModified": "2022-09-13", "datePublished": "2022-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Parasaccharibacter apium" ], "sample_taxid": [ "1510841" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.390 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 56.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1397487", "Number of Sequences": "150", "Longest Sequences (bp)": "51252", "N50 (bp)": "15152", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.1", "Number of CDSs": "1120", "Average Protein Length": "328.5", "Coding Ratio (%)": "79.0", "Number of rRNAs": "1", "Number of tRNAs": "25", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bombella apis", "strain": "strain=MRM1", "accession": "GCA_014878255.1", "taxid": 1785988, "species_taxid": 1785988, "relation_to_type": "type", "validated": true, "ani": 88.1268, "matched_fragments": 351, "total_fragments": 395, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bombella apis", "strain": "strain=MRM1", "accession": "GCA_018221685.1", "taxid": 1785988, "species_taxid": 1785988, "relation_to_type": "type", "validated": true, "ani": 88.103, "matched_fragments": 354, "total_fragments": 395, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bombella favorum", "strain": "strain=TMW 2.1880", "accession": "GCA_014048475.1", "taxid": 2039164, "species_taxid": 2039164, "relation_to_type": "type", "validated": true, "ani": 82.3341, "matched_fragments": 314, "total_fragments": 395, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bombella intestini", "strain": "strain=R-52487", "accession": "GCA_002003665.1", "taxid": 1539051, "species_taxid": 1539051, "relation_to_type": "type", "validated": true, "ani": 81.9019, "matched_fragments": 303, "total_fragments": 395, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter potus", "strain": "strain=R-71646", "accession": "GCA_015244705.1", "taxid": 2724927, "species_taxid": 2724927, "relation_to_type": "type", "validated": true, "ani": 77.2748, "matched_fragments": 80, "total_fragments": 395, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter aidae", "strain": "strain=AC10", "accession": "GCA_009547075.1", "taxid": 2662454, "species_taxid": 2662454, "relation_to_type": "type", "validated": true, "ani": 77.1897, "matched_fragments": 76, "total_fragments": 395, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter japonicus", "strain": "strain=NBRC 3271", "accession": "GCA_002723975.1", "taxid": 376620, "species_taxid": 376620, "relation_to_type": "type", "validated": true, "ani": 77.1372, "matched_fragments": 52, "total_fragments": 395, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter potus", "strain": "strain=LMG 1764", "accession": "GCA_001580675.1", "taxid": 2724927, "species_taxid": 2724927, "relation_to_type": "type", "validated": true, "ani": 77.094, "matched_fragments": 76, "total_fragments": 395, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asaia lannensis", "strain": "strain=NBRC 102526", "accession": "GCA_024054035.1", "taxid": 415421, "species_taxid": 415421, "relation_to_type": "type", "validated": true, "ani": 77.032, "matched_fragments": 51, "total_fragments": 395, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter roseus", "strain": "strain=NBRC 3990", "accession": "GCA_006538885.1", "taxid": 586239, "species_taxid": 586239, "relation_to_type": "type", "validated": true, "ani": 77.0246, "matched_fragments": 81, "total_fragments": 395, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter melaceti", "strain": "strain=AV382", "accession": "GCA_003403295.1", "taxid": 2766577, "species_taxid": 2766577, "relation_to_type": "type", "validated": true, "ani": 76.7908, "matched_fragments": 71, "total_fragments": 395, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidomonas methanolica", "strain": "strain=NBRC 104435", "accession": "GCA_007988925.1", "taxid": 437, "species_taxid": 437, "relation_to_type": "type", "validated": true, "ani": 76.785, "matched_fragments": 57, "total_fragments": 395, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tanticharoenia sakaeratensis", "strain": "strain=NBRC 103193", "accession": "GCA_000963885.1", "taxid": 444053, "species_taxid": 444053, "relation_to_type": "type", "validated": true, "ani": 76.4224, "matched_fragments": 51, "total_fragments": 395, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 56.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014048465.1", "gtdb_species": "s__Bombella mellum", "ani": 98.0638, "matched_fragments": 383, "total_fragments": 395, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Bombella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_018221685.1", "gtdb_species": "s__Bombella apis", "ani": 88.1031, "matched_fragments": 354, "total_fragments": 395, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Bombella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "98.65", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_014048475.1", "gtdb_species": "s__Bombella favorum", "ani": 82.3341, "matched_fragments": 314, "total_fragments": 395, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Bombella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002003665.1", "gtdb_species": "s__Bombella intestini", "ani": 81.9019, "matched_fragments": 303, "total_fragments": 395, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Bombella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009725755.1", "gtdb_species": "s__Bombella sp009725755", "ani": 78.1301, "matched_fragments": 126, "total_fragments": 395, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Bombella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", 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