{ "type": "genome", "identifier": "GCA_946477765.1", "organism": "Bifidobacterium asteroides", "title": "Bifidobacterium asteroides", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_946477765.1", "bioproject": "PRJEB55076", "biosample": "SAMEA110697397", "wgs_master": "CAMKZH000000000.1", "refseq_category": "na", "taxid": "1684", "species_taxid": "1684", "organism_name": "Bifidobacterium asteroides", "infraspecific_name": "", "isolate": "SRR10810004_bin.11_metawrap_v1.3.0_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/13", "asm_name": "SRR10810004_bin.11_metawrap_v1.3.0_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/477/765/GCA_946477765.1_SRR10810004_bin.11_metawrap_v1.3.0_MAG", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-13", "dateModified": "2022-09-13", "datePublished": "2022-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium asteroides" ], "sample_taxid": [ "1684" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "0.335 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 33.45, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1178052", "Number of Sequences": "151", "Longest Sequences (bp)": "37762", "N50 (bp)": "10926", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.6", "Number of CDSs": "817", "Average Protein Length": "348.7", "Coding Ratio (%)": "72.5", "Number of rRNAs": "0", "Number of tRNAs": "22", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium polysaccharolyticum", "strain": "strain=W8117", "accession": "GCA_016101585.1", "taxid": 2750967, "species_taxid": 2750967, "relation_to_type": "type", "validated": true, "ani": 95.9463, "matched_fragments": 294, "total_fragments": 323, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium apousia", "strain": "strain=W8102", "accession": "GCA_007559275.1", "taxid": 2750996, "species_taxid": 2750996, "relation_to_type": "type", "validated": true, "ani": 91.8598, "matched_fragments": 257, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium choladohabitans", "strain": "strain=B14384H11", "accession": "GCA_016102005.1", "taxid": 2750947, "species_taxid": 2750947, "relation_to_type": "type", "validated": true, "ani": 91.8436, "matched_fragments": 284, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium asteroides", "strain": "strain=DSM 20089", "accession": "GCA_002715865.1", "taxid": 1684, "species_taxid": 1684, "relation_to_type": "suspected-type", "validated": true, "ani": 91.8068, "matched_fragments": 289, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium asteroides", "strain": "strain=DSM 20089", "accession": "GCA_000771125.1", "taxid": 1684, "species_taxid": 1684, "relation_to_type": "suspected-type", "validated": true, "ani": 91.7076, "matched_fragments": 283, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium mizhiense", "strain": "strain=S053-2", "accession": "GCA_020884755.1", "taxid": 2879940, "species_taxid": 2879940, "relation_to_type": "type", "validated": true, "ani": 91.3082, "matched_fragments": 273, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium miconisargentati", "strain": "strain=82T25", "accession": "GCA_019331675.1", "taxid": 2834437, "species_taxid": 2834437, "relation_to_type": "type", "validated": true, "ani": 77.5717, "matched_fragments": 86, "total_fragments": 323, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 33.45, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_003202715.1", "gtdb_species": "s__Bifidobacterium asteroides_E", "ani": 95.8775, "matched_fragments": 296, "total_fragments": 323, "gtdb_taxonomy": 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