{ "type": "genome", "identifier": "GCA_946480015.1", "organism": "uncultured Oxalobacteraceae bacterium", "title": "uncultured Oxalobacteraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_946480015.1", "bioproject": "PRJEB55045", "biosample": "SAMEA110698786", "wgs_master": "CAMLIL000000000.1", "refseq_category": "na", "taxid": "253871", "species_taxid": "253871", "organism_name": "uncultured Oxalobacteraceae bacterium", "infraspecific_name": "", "isolate": "ERR5385024_bin.4_metawrap_v1.3.0_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/13", "asm_name": "ERR5385024_bin.4_metawrap_v1.3.0_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/480/015/GCA_946480015.1_ERR5385024_bin.4_metawrap_v1.3.0_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-13", "dateModified": "2022-09-13", "datePublished": "2022-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Oxalobacteraceae bacterium" ], "sample_taxid": [ "253871" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "1.606 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 59.26, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5747444", "Number of Sequences": "214", "Longest Sequences (bp)": "117034", "N50 (bp)": "48051", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.7", "Number of CDSs": "4841", "Average Protein Length": "341.3", "Coding Ratio (%)": "86.3", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Massilia atriviolacea", "strain": "strain=SOD", "accession": "GCA_003953935.1", "taxid": 2495579, "species_taxid": 2495579, "relation_to_type": "type", "validated": true, "ani": 82.5228, "matched_fragments": 1033, "total_fragments": 1817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia mucilaginosa", "strain": "strain=CCM 8733", "accession": "GCA_011682145.1", "taxid": 2609282, "species_taxid": 2609282, "relation_to_type": "type", "validated": true, "ani": 82.3303, "matched_fragments": 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"below_threshold" }, { "organism_name": "Massilia cavernae", "strain": "strain=K1S02-61", "accession": "GCA_003590855.1", "taxid": 2320864, "species_taxid": 2320864, "relation_to_type": "type", "validated": true, "ani": 81.6139, "matched_fragments": 759, "total_fragments": 1817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia psychrophila", "strain": "strain=JCM 30813", "accession": "GCA_002760665.1", "taxid": 1603353, "species_taxid": 1603353, "relation_to_type": "type", "validated": true, "ani": 81.3335, "matched_fragments": 748, "total_fragments": 1817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia psychrophila", "strain": "strain=CGMCC 1.15196", "accession": "GCA_014641415.1", "taxid": 1603353, "species_taxid": 1603353, "relation_to_type": "type", "validated": true, "ani": 81.3145, "matched_fragments": 759, "total_fragments": 1817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia 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"GCA_024753145.1", "taxid": 1811224, "species_taxid": 1811224, "relation_to_type": "type", "validated": true, "ani": 80.8096, "matched_fragments": 808, "total_fragments": 1817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas apoptosis", "strain": "strain=LX47W", "accession": "GCA_014042355.1", "taxid": 2758570, "species_taxid": 2758570, "relation_to_type": "type", "validated": true, "ani": 80.7484, "matched_fragments": 756, "total_fragments": 1817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas fusca", "strain": "strain=FT3S", "accession": "GCA_014042365.1", "taxid": 2758568, "species_taxid": 2758568, "relation_to_type": "type", "validated": true, "ani": 80.7417, "matched_fragments": 802, "total_fragments": 1817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia oculi", "strain": "strain=CCUG 43427", "accession": "GCA_003143515.1", "taxid": 945844, "species_taxid": 945844, 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