{ "type": "genome", "identifier": "GCA_946480435.1", "organism": "Lactobacillus helsingborgensis", "title": "Lactobacillus helsingborgensis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_946480435.1", "bioproject": "PRJEB55166", "biosample": "SAMEA110701641", "wgs_master": "CAMLJI000000000.1", "refseq_category": "na", "taxid": "1218494", "species_taxid": "1218494", "organism_name": "Lactobacillus helsingborgensis", "infraspecific_name": "", "isolate": "SRR12181036_bin.5_metawrap_v1.3.0_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/13", "asm_name": "SRR12181036_bin.5_metawrap_v1.3.0_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/480/435/GCA_946480435.1_SRR12181036_bin.5_metawrap_v1.3.0_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-13", "dateModified": "2022-09-13", "datePublished": "2022-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactobacillus helsingborgensis" ], "sample_taxid": [ "1218494" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.494 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 64.58, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1734338", "Number of Sequences": "88", "Longest Sequences (bp)": "67997", "N50 (bp)": "30925", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.7", "Number of CDSs": "1589", "Average Protein Length": "310.3", "Coding Ratio (%)": "85.3", "Number of rRNAs": "0", "Number of tRNAs": "19", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactobacillus laiwuensis", "strain": "strain=F551-2", "accession": "GCA_019972835.1", "taxid": 2841034, "species_taxid": 2841034, "relation_to_type": "type", "validated": true, "ani": 83.4082, "matched_fragments": 356, "total_fragments": 539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus huangpiensis", "strain": "strain=F306-1", "accession": "GCA_019972815.1", "taxid": 2799571, "species_taxid": 2799571, "relation_to_type": "type", "validated": true, "ani": 82.9075, "matched_fragments": 352, "total_fragments": 539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus apis", "strain": "strain=CCM 8403", "accession": "GCA_014635365.1", "taxid": 303541, "species_taxid": 303541, "relation_to_type": "type", "validated": true, "ani": 78.4908, "matched_fragments": 182, "total_fragments": 539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus apis", "strain": "strain=LMG 26964", "accession": "GCA_002837055.1", "taxid": 303541, "species_taxid": 303541, "relation_to_type": "type", "validated": true, "ani": 78.3366, "matched_fragments": 164, "total_fragments": 539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus bombicola", "strain": "strain=R-53102", "accession": "GCA_900112665.1", "taxid": 1505723, "species_taxid": 1505723, "relation_to_type": "type", "validated": true, "ani": 78.0014, "matched_fragments": 163, "total_fragments": 539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus bombicola", "strain": "strain=H70-3", "accession": "GCA_002916915.1", "taxid": 1505723, "species_taxid": 1505723, "relation_to_type": "type", "validated": true, "ani": 77.9375, "matched_fragments": 163, "total_fragments": 539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus hamsteri", "strain": "strain=JCM 6256", "accession": "GCA_000615445.1", "taxid": 96565, "species_taxid": 96565, "relation_to_type": "type", "validated": true, "ani": 77.1101, "matched_fragments": 84, "total_fragments": 539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus acetotolerans", "strain": "strain=JCM 3825", "accession": "GCA_014648715.1", "taxid": 1600, "species_taxid": 1600, "relation_to_type": "type", "validated": true, "ani": 77.1056, "matched_fragments": 98, "total_fragments": 539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus hamsteri", "strain": "strain=DSM 5661", "accession": "GCA_001434515.1", "taxid": 96565, "species_taxid": 96565, "relation_to_type": "type", "validated": true, "ani": 77.0943, "matched_fragments": 86, "total_fragments": 539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus amylovorus", "strain": "strain=DSM 20531", "accession": "GCA_002706375.1", "taxid": 1604, "species_taxid": 1604, "relation_to_type": "type", "validated": true, "ani": 76.8864, "matched_fragments": 69, "total_fragments": 539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus gallinarum", "strain": "strain=DSM 10532", "accession": "GCA_001434975.1", "taxid": 52242, "species_taxid": 52242, "relation_to_type": "type", "validated": true, "ani": 76.5353, "matched_fragments": 86, "total_fragments": 539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus rodentium", "strain": "strain=DSM 24759", "accession": "GCA_003423665.1", "taxid": 947835, "species_taxid": 947835, "relation_to_type": "type", "validated": true, "ani": 76.533, "matched_fragments": 56, "total_fragments": 539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus rodentium", "strain": "strain=DSM 24759", "accession": "GCA_024622425.1", "taxid": 947835, "species_taxid": 947835, "relation_to_type": "type", "validated": true, "ani": 76.5306, "matched_fragments": 55, "total_fragments": 539, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus taiwanensis", "strain": "strain=DSM 21401", "accession": "GCA_001436695.1", "taxid": 508451, "species_taxid": 508451, "relation_to_type": "type", "validated": true, "ani": 76.3355, "matched_fragments": 53, "total_fragments": 539, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 64.58, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_000970855.1", "gtdb_species": "s__Lactobacillus 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"helsingborgensis" ], "_meo": [ { "id": "MEO_0000468", "label": "gut" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }