{ "type": "genome", "identifier": "GCA_946480655.1", "organism": "uncultured Devosia sp.", "title": "uncultured Devosia sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_946480655.1", "bioproject": "PRJEB55217", "biosample": "SAMEA110699746", "wgs_master": "CAMLKN000000000.1", "refseq_category": "na", "taxid": "211434", "species_taxid": "211434", "organism_name": "uncultured Devosia sp.", "infraspecific_name": "", "isolate": "SRR14536362_bin.18_metawrap_v1.3.0_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/13", "asm_name": "SRR14536362_bin.18_metawrap_v1.3.0_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/480/655/GCA_946480655.1_SRR14536362_bin.18_metawrap_v1.3.0_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-13", "dateModified": "2022-09-13", "datePublished": "2022-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Devosia sp." ], "sample_taxid": [ "211434" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.715 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 38.43, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2552078", "Number of Sequences": "362", "Longest Sequences (bp)": "43758", "N50 (bp)": "8734", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.8", "Number of CDSs": "2222", "Average Protein Length": "288.7", "Coding Ratio (%)": "75.4", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Devosia salina", "strain": "strain=SCS-3", "accession": "GCA_019504385.1", "taxid": 2860336, "species_taxid": 2860336, "relation_to_type": "type", "validated": true, "ani": 83.8096, "matched_fragments": 535, "total_fragments": 659, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia indica", "strain": "strain=IO390501", "accession": "GCA_003056405.1", "taxid": 2079253, "species_taxid": 2079253, "relation_to_type": "type", "validated": true, "ani": 81.9213, "matched_fragments": 494, "total_fragments": 659, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia subaequoris", "strain": "strain=DSM 23447", "accession": "GCA_014197055.1", "taxid": 395930, "species_taxid": 395930, "relation_to_type": "type", "validated": true, "ani": 81.3287, "matched_fragments": 452, "total_fragments": 659, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia subaequoris", "strain": "strain=HST3-14", "accession": "GCA_024158985.1", "taxid": 395930, "species_taxid": 395930, "relation_to_type": "type", "validated": true, "ani": 81.313, "matched_fragments": 447, "total_fragments": 659, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia chinhatensis", "strain": "strain=IPL18", "accession": "GCA_000969445.1", "taxid": 429727, "species_taxid": 429727, "relation_to_type": "type", "validated": true, "ani": 80.828, "matched_fragments": 389, "total_fragments": 659, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia rhizoryzae", "strain": "strain=LEGU1", "accession": "GCA_016698665.1", "taxid": 2774137, "species_taxid": 2774137, "relation_to_type": "type", "validated": true, "ani": 80.0466, "matched_fragments": 399, "total_fragments": 659, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia beringensis", "strain": "strain=S02", "accession": "GCA_014926585.1", "taxid": 2657486, "species_taxid": 2657486, "relation_to_type": "type", "validated": true, "ani": 79.8731, "matched_fragments": 419, "total_fragments": 659, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia oryziradicis", "strain": "strain=G19", "accession": "GCA_016698645.1", "taxid": 2801335, "species_taxid": 2801335, "relation_to_type": "type", "validated": true, "ani": 79.695, "matched_fragments": 404, "total_fragments": 659, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 38.43, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016411825.1", "gtdb_species": "s__Devosia sp016411825", "ani": 83.4846, "matched_fragments": 523, "total_fragments": 659, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001650025.1", "gtdb_species": "s__Devosia elaeis", "ani": 82.0191, "matched_fragments": 453, "total_fragments": 659, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003056405.1", "gtdb_species": "s__Devosia indica", "ani": 81.9066, "matched_fragments": 495, "total_fragments": 659, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900177655.1", "gtdb_species": "s__Devosia lucknowensis", "ani": 81.8597, "matched_fragments": 476, "total_fragments": 659, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014197055.1", "gtdb_species": "s__Devosia subaequoris", "ani": 81.3287, "matched_fragments": 452, "total_fragments": 659, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900631955.1", "gtdb_species": "s__Devosia sp001899045", "ani": 80.8529, "matched_fragments": 423, "total_fragments": 659, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.09", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000969445.1", "gtdb_species": "s__Devosia chinhatensis", "ani": 80.8125, "matched_fragments": 390, "total_fragments": 659, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000743575.1", "gtdb_species": "s__Devosia riboflavina", "ani": 80.3639, "matched_fragments": 407, "total_fragments": 659, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014837245.1", "gtdb_species": "s__Devosia sp014837245", "ani": 80.027, "matched_fragments": 360, "total_fragments": 659, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.26, "cell_length": 0.157, "doubling_h": null, "growth_tmp": 26.73, "optimum_tmp": 27.125, "optimum_ph": 7.393, "genome_size": 4123393.25, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.909, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.909, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.09, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhizobiales", "f__Devosiaceae", "g__Devosia", "s__Devosia sp946480655" ], "_genome_taxon": [ "uncultured", "Devosia", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhizobiales", "f__Devosiaceae", "g__Devosia", "s__Devosia sp946480655", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Rhizobiales", "Devosiaceae", "Devosia", "Devosia", "sp946480655" ], "_meo": [ { "id": "MEO_0000055", "label": "rhizosphere" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }