{ "type": "genome", "identifier": "GCA_946482005.1", "organism": "uncultured Gilliamella sp.", "title": "uncultured Gilliamella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_946482005.1", "bioproject": "PRJEB55166", "biosample": "SAMEA110701654", "wgs_master": "CAMLPV000000000.1", "refseq_category": "na", "taxid": "1193505", "species_taxid": "1193505", "organism_name": "uncultured Gilliamella sp.", "infraspecific_name": "", "isolate": "SRR12181053_bin.8_metawrap_v1.3.0_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/13", "asm_name": "SRR12181053_bin.8_metawrap_v1.3.0_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/482/005/GCA_946482005.1_SRR12181053_bin.8_metawrap_v1.3.0_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-13", "dateModified": "2022-09-13", "datePublished": "2022-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Gilliamella sp." ], "sample_taxid": [ "1193505" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.708 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2515732", "Number of Sequences": "34", "Longest Sequences (bp)": "298040", "N50 (bp)": "141549", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.4", "Number of CDSs": "2202", "Average Protein Length": "320.9", "Coding Ratio (%)": "84.3", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "9" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gilliamella apicola", "strain": "strain=wkB1", "accession": "GCA_000599985.1", "taxid": 1196095, "species_taxid": 1196095, "relation_to_type": "suspected-type", "validated": true, "ani": 89.8024, "matched_fragments": 571, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilliamella apicola", "strain": "strain=DSM 104097", "accession": "GCA_003201455.1", "taxid": 1196095, "species_taxid": 1196095, "relation_to_type": "suspected-type", "validated": true, "ani": 89.7254, "matched_fragments": 557, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilliamella apis", "strain": "strain=NO3", "accession": "GCA_002142155.1", "taxid": 1970738, "species_taxid": 1970738, "relation_to_type": "type", "validated": true, "ani": 82.9895, "matched_fragments": 460, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilliamella bombicola", "strain": "strain=R-53248", "accession": "GCA_900094945.1", "taxid": 1798182, "species_taxid": 1798182, "relation_to_type": "type", "validated": true, "ani": 79.8694, "matched_fragments": 352, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilliamella intestini", "strain": "strain=R-53144", "accession": "GCA_900094935.1", "taxid": 1798183, "species_taxid": 1798183, "relation_to_type": "type", "validated": true, "ani": 79.608, "matched_fragments": 334, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frischella japonica", "strain": "strain=Ac13", "accession": "GCA_014489845.1", "taxid": 2741544, "species_taxid": 2741544, "relation_to_type": "type", "validated": true, "ani": 77.5687, "matched_fragments": 159, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 70.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001693435.1", "gtdb_species": "s__Gilliamella apicola_N", "ani": 92.156, "matched_fragments": 562, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.54", "min_intra_species_ani": "96.32", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 19, "status": "-" }, { "accession": "GCF_000599985.1", "gtdb_species": "s__Gilliamella apicola", "ani": 89.8024, "matched_fragments": 571, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.05", "min_intra_species_ani": "97.62", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCF_003202915.1", "gtdb_species": "s__Gilliamella apicola_Q", "ani": 88.4989, "matched_fragments": 596, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.60", "min_intra_species_ani": "95.60", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002142215.1", "gtdb_species": "s__Gilliamella sp002142215", "ani": 84.1279, "matched_fragments": 496, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "96.09", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002142155.1", "gtdb_species": "s__Gilliamella apis", "ani": 82.9809, "matched_fragments": 461, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "97.64", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 26, "status": "-" }, { "accession": "GCF_003202775.1", "gtdb_species": "s__Gilliamella apis_A", "ani": 82.2019, "matched_fragments": 498, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "95.38", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_001693745.1", "gtdb_species": "s__Gilliamella apicola_E", "ani": 81.9246, "matched_fragments": 452, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "97.90", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001693755.1", "gtdb_species": "s__Gilliamella apicola_F", "ani": 79.9626, "matched_fragments": 385, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.98", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900103255.1", "gtdb_species": "s__Gilliamella bombi", "ani": 79.8854, "matched_fragments": 353, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.07", "min_intra_species_ani": "95.43", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.80", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_900094945.1", "gtdb_species": "s__Gilliamella bombicola", "ani": 79.8754, "matched_fragments": 352, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "97.05", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900103085.1", "gtdb_species": "s__Gilliamella mensalis", "ani": 79.7688, "matched_fragments": 337, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900094935.1", "gtdb_species": "s__Gilliamella intestini", "ani": 79.6227, "matched_fragments": 333, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001690525.1", "gtdb_species": "s__Gilliamella apicola_H", "ani": 79.5321, "matched_fragments": 346, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.50", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001690275.1", "gtdb_species": "s__Gilliamella apicola_C", "ani": 79.3714, "matched_fragments": 348, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "96.31", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.82", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_001690195.1", "gtdb_species": "s__Gilliamella apicola_L", "ani": 79.1643, "matched_fragments": 351, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.176, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 2569455.19, "gc_content": 34.05, "coding_genes": 2731.333, "rRNA16S_genes": 4.0, "tRNA_genes": 52.0, "gram_stain": 0.0, "sporulation": null, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Enterobacteriaceae", "g__Gilliamella", "s__Gilliamella sp946482005" ], "_genome_taxon": [ "uncultured", "Gilliamella", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Enterobacteriaceae", "g__Gilliamella", "s__Gilliamella sp946482005", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Enterobacteriaceae", "Gilliamella", "Gilliamella", "sp946482005" ], "_meo": [ { "id": "MEO_0000468", "label": "gut" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }