{
    "type": "genome",
    "identifier": "GCA_946535985.1",
    "organism": "uncultured Treponema sp.",
    "title": "uncultured Treponema sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMBL-EBI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_946535985.1",
        "bioproject": "PRJEB22623",
        "biosample": "SAMEA110744768",
        "wgs_master": "CAMNDY000000000.1",
        "refseq_category": "na",
        "taxid": "162155",
        "species_taxid": "162155",
        "organism_name": "uncultured Treponema sp.",
        "infraspecific_name": "",
        "isolate": "SRR873596_bin.67_metaWRAP_v1.3_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/13",
        "asm_name": "SRR873596_bin.67_metaWRAP_v1.3_MAG",
        "submitter": "EMBL-EBI",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/535/985/GCA_946535985.1_SRR873596_bin.67_metaWRAP_v1.3_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-13",
    "dateModified": "2022-09-13",
    "datePublished": "2022-09-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Treponema sp."
        ],
        "sample_taxid": [
            "162155"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "New Zealand"
        ],
        "sample_host_location_id": [],
        "data_size": "0.792 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 70.6,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2782982",
        "Number of Sequences": "148",
        "Longest Sequences (bp)": "138564",
        "N50 (bp)": "30695",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.9",
        "Number of CDSs": "2194",
        "Average Protein Length": "366.6",
        "Coding Ratio (%)": "86.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Treponema rectale",
                "strain": "strain=DSM 103679",
                "accession": "GCA_014202035.1",
                "taxid": 744512,
                "species_taxid": 744512,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.3681,
                "matched_fragments": 67,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Treponema berlinense",
                "strain": "strain=ATCC BAA-909",
                "accession": "GCA_900167025.1",
                "taxid": 225004,
                "species_taxid": 225004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1569,
                "matched_fragments": 60,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Treponema porcinum",
                "strain": "strain=ATCC BAA-908",
                "accession": "GCA_900167145.1",
                "taxid": 261392,
                "species_taxid": 261392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1046,
                "matched_fragments": 68,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 70.6,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_017651065.1",
                "gtdb_species": "s__Treponema_D sp017651065",
                "ani": 82.6295,
                "matched_fragments": 421,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017551545.1",
                "gtdb_species": "s__Treponema_D sp017551545",
                "ani": 82.1569,
                "matched_fragments": 501,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017617115.1",
                "gtdb_species": "s__Treponema_D sp017617115",
                "ani": 81.9647,
                "matched_fragments": 420,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017617145.1",
                "gtdb_species": "s__Treponema_D sp017617145",
                "ani": 81.8686,
                "matched_fragments": 517,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017963165.1",
                "gtdb_species": "s__Treponema_D sp017963165",
                "ani": 81.5659,
                "matched_fragments": 496,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017550685.1",
                "gtdb_species": "s__Treponema_D sp017550685",
                "ani": 80.9795,
                "matched_fragments": 439,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017616165.1",
                "gtdb_species": "s__Treponema_D sp017616165",
                "ani": 80.8402,
                "matched_fragments": 414,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017544745.1",
                "gtdb_species": "s__Treponema_D sp017544745",
                "ani": 80.4836,
                "matched_fragments": 229,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016290335.1",
                "gtdb_species": "s__Treponema_D sp016290335",
                "ani": 78.6833,
                "matched_fragments": 262,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016293915.1",
                "gtdb_species": "s__Treponema_D sp016293915",
                "ani": 78.6543,
                "matched_fragments": 282,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "98.17",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900111035.1",
                "gtdb_species": "s__Treponema_D bryantii_C",
                "ani": 78.6101,
                "matched_fragments": 286,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900113965.1",
                "gtdb_species": "s__Treponema_D bryantii_A",
                "ani": 78.2864,
                "matched_fragments": 279,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017940255.1",
                "gtdb_species": "s__Treponema_D sp017940255",
                "ani": 78.1534,
                "matched_fragments": 218,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017470605.1",
                "gtdb_species": "s__Treponema_D sp017470605",
                "ani": 78.0649,
                "matched_fragments": 226,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017553635.1",
                "gtdb_species": "s__Treponema_D sp017553635",
                "ani": 77.4948,
                "matched_fragments": 94,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "98.74",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017962415.1",
                "gtdb_species": "s__Treponema_D sp017962415",
                "ani": 77.4286,
                "matched_fragments": 182,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902797305.1",
                "gtdb_species": "s__Treponema_D sp902797305",
                "ani": 76.7437,
                "matched_fragments": 69,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018066075.1",
                "gtdb_species": "s__Treponema_D sp018066075",
                "ani": 76.3662,
                "matched_fragments": 50,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.59,
        "cell_length": 0.834,
        "doubling_h": 0.49,
        "growth_tmp": 35.047,
        "optimum_tmp": 33.75,
        "optimum_ph": 7.183,
        "genome_size": 2974429.677,
        "gc_content": 43.752,
        "coding_genes": 2837.944,
        "rRNA16S_genes": 2.285,
        "tRNA_genes": 45.166,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.055,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.055,
        "spiral_cell_shape": 0.888
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Spirochaetia",
        "o__Treponematales",
        "f__Treponemataceae",
        "g__Treponema_D",
        "s__Treponema_D sp946535985"
    ],
    "_genome_taxon": [
        "uncultured",
        "Treponema",
        "sp.",
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Spirochaetia",
        "o__Treponematales",
        "f__Treponemataceae",
        "g__Treponema_D",
        "s__Treponema_D sp946535985",
        "Bacteria",
        "Spirochaetota",
        "Spirochaetia",
        "Treponematales",
        "Treponemataceae",
        "Treponema",
        "D",
        "Treponema",
        "D",
        "sp946535985"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}