{ "type": "genome", "identifier": "GCA_946541545.1", "organism": "uncultured Atopobiaceae bacterium", "title": "uncultured Atopobiaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMBL-EBI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_946541545.1", "bioproject": "PRJEB22623", "biosample": "SAMEA110744824", "wgs_master": "CAMNJP000000000.1", "refseq_category": "na", "taxid": "2321400", "species_taxid": "2321400", "organism_name": "uncultured Atopobiaceae bacterium", "infraspecific_name": "", "isolate": "SRR873597_bin.25_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/13", "asm_name": "SRR873597_bin.25_metaWRAP_v1.3_MAG", "submitter": "EMBL-EBI", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/541/545/GCA_946541545.1_SRR873597_bin.25_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-13", "dateModified": "2022-09-13", "datePublished": "2022-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Atopobiaceae bacterium" ], "sample_taxid": [ "2321400" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand" ], "sample_host_location_id": [], "data_size": "0.597 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 41.24, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2116103", "Number of Sequences": "307", "Longest Sequences (bp)": "33904", "N50 (bp)": "7925", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.6", "Number of CDSs": "1703", "Average Protein Length": "305.2", "Coding Ratio (%)": "73.7", "Number of rRNAs": "0", "Number of tRNAs": "22", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Olsenella intestinalis", "strain": "strain=KCTC 25379", "accession": "GCA_023276655.1", "taxid": 2930083, "species_taxid": 2930083, "relation_to_type": "type", "validated": true, "ani": 78.8302, "matched_fragments": 174, "total_fragments": 550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella phocaeensis", "strain": "strain=Marseille-P2936", "accession": "GCA_900120385.1", "taxid": 1852385, "species_taxid": 1852385, "relation_to_type": "type", "validated": true, "ani": 78.3205, "matched_fragments": 159, "total_fragments": 550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter mediterraneus", "strain": "strain=Marseille-P3256", "accession": "GCA_900119385.1", "taxid": 1871031, "species_taxid": 1871031, "relation_to_type": "type", "validated": true, "ani": 78.2895, "matched_fragments": 168, "total_fragments": 550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella massiliensis", "strain": "strain=SIT9", "accession": "GCA_001457795.1", "taxid": 1622075, "species_taxid": 1622075, "relation_to_type": "type", "validated": true, "ani": 78.2616, "matched_fragments": 135, "total_fragments": 550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella urininfantis", "strain": "strain=Marseille-P3197", "accession": "GCA_900155635.1", "taxid": 1871033, "species_taxid": 1871033, "relation_to_type": "type", "validated": true, "ani": 78.2084, "matched_fragments": 116, "total_fragments": 550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter provencensis", "strain": "strain=Marseille-P2912", "accession": "GCA_900128445.1", "taxid": 1852386, "species_taxid": 1852386, "relation_to_type": "type", "validated": true, "ani": 78.1808, "matched_fragments": 162, "total_fragments": 550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella uli", "strain": "strain=DSM 7084", "accession": "GCA_001437585.1", "taxid": 133926, "species_taxid": 133926, "relation_to_type": "suspected-type", "validated": true, "ani": 78.1083, "matched_fragments": 130, "total_fragments": 550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella uli", "strain": "strain=DSM 7084", "accession": "GCA_000143845.1", "taxid": 133926, "species_taxid": 133926, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0549, "matched_fragments": 131, "total_fragments": 550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter immobilis", "strain": "strain=LZLJ-2", "accession": "GCA_015277515.1", "taxid": 2779519, "species_taxid": 2779519, "relation_to_type": "type", "validated": true, "ani": 77.9071, "matched_fragments": 138, "total_fragments": 550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parolsenella massiliensis", "strain": "strain=Marseille-P3237", "accession": "GCA_900143685.1", "taxid": 1871022, "species_taxid": 1871022, "relation_to_type": "type", "validated": true, "ani": 77.411, "matched_fragments": 118, "total_fragments": 550, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 41.24, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902779675.1", "gtdb_species": "s__UBA1367 sp902779675", "ani": 98.0113, "matched_fragments": 484, "total_fragments": 550, "gtdb_taxonomy": 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