{ "type": "genome", "identifier": "GCA_946562415.1", "organism": "uncultured Lachnospiraceae bacterium", "title": "uncultured Lachnospiraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_946562415.1", "bioproject": "PRJEB54774", "biosample": "SAMEA110744987", "wgs_master": "CAMNVI000000000.1", "refseq_category": "na", "taxid": "297314", "species_taxid": "297314", "organism_name": "uncultured Lachnospiraceae bacterium", "infraspecific_name": "", "isolate": "SRR19792984_bin.6_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/13", "asm_name": "SRR19792984_bin.6_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/562/415/GCA_946562415.1_SRR19792984_bin.6_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-13", "dateModified": "2022-09-13", "datePublished": "2022-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lachnospiraceae bacterium" ], "sample_taxid": [ "297314" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "1.378 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 89.58, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4832635", "Number of Sequences": "178", "Longest Sequences (bp)": "209868", "N50 (bp)": "47389", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.5", "Number of CDSs": "4130", "Average Protein Length": "337.7", "Coding Ratio (%)": "86.6", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Massilistercora timonensis", "strain": "strain=Marseille-P3756", "accession": "GCA_900312975.1", "taxid": 2086584, "species_taxid": 2086584, "relation_to_type": "type", "validated": true, "ani": 76.6853, "matched_fragments": 53, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella massiliensis", "strain": "strain=AT11", "accession": "GCA_900243045.1", "taxid": 1720294, "species_taxid": 1720294, "relation_to_type": "type", "validated": true, "ani": 76.6494, "matched_fragments": 105, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineothrix alysoides", "strain": "strain=KNHs209", "accession": "GCA_000732725.1", "taxid": 1469948, "species_taxid": 1469948, "relation_to_type": "type", "validated": true, "ani": 76.4629, "matched_fragments": 66, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineothrix alysoides", "strain": "strain=DSM 100556", "accession": "GCA_004345255.1", "taxid": 1469948, "species_taxid": 1469948, "relation_to_type": "type", "validated": true, "ani": 76.4498, "matched_fragments": 65, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella porci", "strain": "strain=WCA-389-WT-23B", "accession": "GCA_009696275.1", "taxid": 2652274, "species_taxid": 2652274, "relation_to_type": "type", "validated": true, "ani": 76.4376, "matched_fragments": 106, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia pseudococcoides", "strain": "strain=YL58", "accession": "GCA_001689125.2", "taxid": 1796616, "species_taxid": 1796616, "relation_to_type": "type", "validated": true, "ani": 76.2844, "matched_fragments": 58, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia pseudococcoides", "strain": "strain=YL58", "accession": "GCA_016696745.1", "taxid": 1796616, "species_taxid": 1796616, "relation_to_type": "type", "validated": true, "ani": 76.2844, "matched_fragments": 58, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia pseudococcoides", "strain": "strain=YL58", "accession": "GCA_002221555.2", "taxid": 1796616, "species_taxid": 1796616, "relation_to_type": "type", "validated": true, "ani": 76.2544, "matched_fragments": 59, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_025149285.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1965, "matched_fragments": 54, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella tayi", "strain": "strain=DSM 26961", "accession": "GCA_001881565.1", "taxid": 1432052, "species_taxid": 1432052, "relation_to_type": "type", "validated": true, "ani": 76.0423, "matched_fragments": 107, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia marasmi", "strain": "strain=Marseille-P2377", "accession": "GCA_900258535.1", "taxid": 1917868, "species_taxid": 1917868, "relation_to_type": "suspected-type", "validated": true, "ani": 75.8455, "matched_fragments": 51, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster 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