{ "type": "genome", "identifier": "GCA_946613345.1", "organism": "uncultured Faecalitalea sp.", "title": "uncultured Faecalitalea sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMBL-EBI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_946613345.1", "bioproject": "PRJEB22623", "biosample": "SAMEA110745628", "wgs_master": "CAMOFL000000000.1", "refseq_category": "na", "taxid": "1702220", "species_taxid": "1702220", "organism_name": "uncultured Faecalitalea sp.", "infraspecific_name": "", "isolate": "SRR873600_bin.12_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/13", "asm_name": "SRR873600_bin.12_metaWRAP_v1.3_MAG", "submitter": "EMBL-EBI", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/613/345/GCA_946613345.1_SRR873600_bin.12_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-13", "dateModified": "2022-09-13", "datePublished": "2022-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Faecalitalea sp." ], "sample_taxid": [ "1702220" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand" ], "sample_host_location_id": [], "data_size": "0.549 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.45, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1941304", "Number of Sequences": "38", "Longest Sequences (bp)": "165655", "N50 (bp)": "78159", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.1", "Number of CDSs": "2014", "Average Protein Length": "296.5", "Coding Ratio (%)": "92.3", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Absicoccus porci", "strain": "strain=YH-panp20", "accession": "GCA_003725415.1", "taxid": 2486576, "species_taxid": 2486576, "relation_to_type": "type", "validated": true, "ani": 98.4298, "matched_fragments": 565, "total_fragments": 630, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Holdemanella biformis", "strain": "strain=DSM 3989", "accession": "GCA_000156655.1", "taxid": 1735, "species_taxid": 1735, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1514, "matched_fragments": 102, "total_fragments": 630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Holdemanella porci", "strain": "strain=LKV-472-APC-3", "accession": "GCA_009696075.1", "taxid": 2652276, "species_taxid": 2652276, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0035, "matched_fragments": 88, "total_fragments": 630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Floccifex porci", "strain": "strain=LKV-178-WT-2G", "accession": "GCA_009696175.1", "taxid": 2606629, "species_taxid": 2606629, "relation_to_type": "type", "validated": true, "ani": 76.8039, "matched_fragments": 58, "total_fragments": 630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catenisphaera adipataccumulans", "strain": "strain=DSM 25799", "accession": "GCA_014202755.1", "taxid": 700500, "species_taxid": 700500, "relation_to_type": "type", "validated": true, "ani": 76.2341, "matched_fragments": 51, "total_fragments": 630, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.45, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003725415.1", "gtdb_species": "s__Absicoccus porci", "ani": 98.4298, "matched_fragments": 565, "total_fragments": 630, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Absicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "98.14", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 14, "status": "conclusive" }, { "accession": "GCA_003480165.1", "gtdb_species": "s__Absicoccus sp000434355", "ani": 78.1807, "matched_fragments": 174, "total_fragments": 630, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Absicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.44", "min_intra_species_ani": "99.16", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_900547815.1", "gtdb_species": "s__Holdemanella sp900547815", "ani": 77.2092, "matched_fragments": 85, "total_fragments": 630, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "96.94", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.75", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000156655.1", "gtdb_species": "s__Holdemanella biformis", "ani": 77.1268, "matched_fragments": 103, "total_fragments": 630, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "95.86", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.56", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCF_009696075.1", "gtdb_species": "s__Holdemanella porci", "ani": 76.9747, "matched_fragments": 89, "total_fragments": 630, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.44", "min_intra_species_ani": "95.01", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.66", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCA_900754615.1", "gtdb_species": "s__Holdemanella sp900754615", "ani": 76.8629, "matched_fragments": 94, "total_fragments": 630, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000420345.1", "gtdb_species": "s__Faecalicoccus pleomorphus", "ani": 76.8323, "matched_fragments": 72, "total_fragments": 630, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Faecalicoccus", "ani_circumscription_radius": 95.0413, "mean_intra_species_ani": "97.06", "min_intra_species_ani": "96.03", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_009696175.1", "gtdb_species": "s__Floccifex porci", "ani": 76.8039, "matched_fragments": 58, "total_fragments": 630, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Floccifex", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.09", "min_intra_species_ani": "99.09", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014202635.1", "gtdb_species": "s__Faecalicoccus acidiformans", "ani": 76.7064, "matched_fragments": 50, "total_fragments": 630, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Faecalicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_902399855.1", "gtdb_species": "s__Faecalicoccus sp900546545", "ani": 76.6475, "matched_fragments": 73, "total_fragments": 630, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Faecalicoccus", "ani_circumscription_radius": 95.0413, "mean_intra_species_ani": "99.03", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_900556915.1", "gtdb_species": "s__Holdemanella sp900556915", "ani": 76.6168, "matched_fragments": 57, "total_fragments": 630, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.25", "min_intra_species_ani": "96.18", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000469305.1", "gtdb_species": "s__Faecalitalea cylindroides", "ani": 76.1218, "matched_fragments": 72, "total_fragments": 630, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Faecalitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.75", "num_clustered_genomes": 12, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.155, "cell_length": 0.176, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 5.65, "genome_size": 1957554.0, "gc_content": 33.053, "coding_genes": 1442.0, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__Erysipelotrichales", "f__Erysipelotrichaceae", "g__Absicoccus", "s__Absicoccus porci" ], "_genome_taxon": [ "uncultured", "Faecalitalea", "sp.", "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__Erysipelotrichales", "f__Erysipelotrichaceae", "g__Absicoccus", "s__Absicoccus porci", "Bacteria", "Bacillota", "I", "Bacilli", "A", "Erysipelotrichales", "Erysipelotrichaceae", "Absicoccus", "Absicoccus", "porci" ], "_meo": [ { "id": "MEO_0000046", "label": "rumen" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }