{ "type": "genome", "identifier": "GCA_947002165.1", "organism": "uncultured Solobacterium sp.", "title": "uncultured Solobacterium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947002165.1", "bioproject": "PRJEB55618", "biosample": "SAMEA111396759", "wgs_master": "CAMQJN000000000.1", "refseq_category": "na", "taxid": "747375", "species_taxid": "747375", "organism_name": "uncultured Solobacterium sp.", "infraspecific_name": "", "isolate": "SRR19721626_bin.20_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/02", "asm_name": "SRR19721626_bin.20_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/002/165/GCA_947002165.1_SRR19721626_bin.20_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-02", "dateModified": "2022-10-02", "datePublished": "2022-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Solobacterium sp." ], "sample_taxid": [ "747375" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.569 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.45, "contamination": 2.08, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2016022", "Number of Sequences": "130", "Longest Sequences (bp)": "106495", "N50 (bp)": "20451", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.2", "Number of CDSs": "2074", "Average Protein Length": "287.5", "Coding Ratio (%)": "88.7", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Holdemanella porci", "strain": "strain=LKV-472-APC-3", "accession": "GCA_009696075.1", "taxid": 2652276, "species_taxid": 2652276, "relation_to_type": "suspected-type", "validated": true, "ani": 95.571, "matched_fragments": 470, "total_fragments": 614, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Holdemanella biformis", "strain": "strain=DSM 3989", "accession": "GCA_000156655.1", "taxid": 1735, "species_taxid": 1735, "relation_to_type": "suspected-type", "validated": true, "ani": 90.1636, "matched_fragments": 498, "total_fragments": 614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Floccifex porci", "strain": "strain=LKV-178-WT-2G", "accession": "GCA_009696175.1", "taxid": 2606629, "species_taxid": 2606629, "relation_to_type": "type", "validated": true, "ani": 77.8573, "matched_fragments": 96, "total_fragments": 614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalitalea cylindroides", "strain": "strain=ATCC 27803", "accession": "GCA_000469305.1", "taxid": 39483, "species_taxid": 39483, "relation_to_type": "type", "validated": true, "ani": 77.433, "matched_fragments": 125, "total_fragments": 614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Absicoccus porci", "strain": "strain=YH-panp20", "accession": "GCA_003725415.1", "taxid": 2486576, "species_taxid": 2486576, "relation_to_type": "type", "validated": true, "ani": 77.2454, "matched_fragments": 83, "total_fragments": 614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalicoccus pleomorphus", "strain": "strain=NCTC11087", "accession": "GCA_900459315.1", "taxid": 1323, "species_taxid": 1323, "relation_to_type": "type", "validated": true, "ani": 77.2074, "matched_fragments": 72, "total_fragments": 614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalicoccus pleomorphus", "strain": "strain=DSM 20574", "accession": "GCA_000420345.1", "taxid": 1323, "species_taxid": 1323, "relation_to_type": "type", "validated": true, "ani": 77.137, "matched_fragments": 73, "total_fragments": 614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalicoccus acidiformans", "strain": "strain=DSM 26963", "accession": "GCA_014202635.1", "taxid": 915173, "species_taxid": 915173, "relation_to_type": "type", "validated": true, "ani": 77.0486, "matched_fragments": 66, "total_fragments": 614, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.45, "contamination": 2.08, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009696075.1", "gtdb_species": "s__Holdemanella porci", "ani": 95.5902, "matched_fragments": 469, "total_fragments": 614, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.44", "min_intra_species_ani": "95.01", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.66", "num_clustered_genomes": 21, "status": "conclusive" }, { "accession": "GCA_900556915.1", "gtdb_species": "s__Holdemanella sp900556915", "ani": 93.9515, "matched_fragments": 308, "total_fragments": 614, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.25", "min_intra_species_ani": "96.18", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003436425.1", "gtdb_species": "s__Holdemanella sp003436425", "ani": 93.6188, "matched_fragments": 505, "total_fragments": 614, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "97.77", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.82", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000156655.1", "gtdb_species": "s__Holdemanella biformis", "ani": 90.1636, "matched_fragments": 498, "total_fragments": 614, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "95.86", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.56", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCA_900547815.1", "gtdb_species": "s__Holdemanella sp900547815", "ani": 89.7133, "matched_fragments": 438, "total_fragments": 614, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "96.94", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.75", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900754615.1", "gtdb_species": "s__Holdemanella sp900754615", "ani": 87.993, "matched_fragments": 444, "total_fragments": 614, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003458715.1", "gtdb_species": "s__Holdemanella sp003458715", "ani": 87.7976, "matched_fragments": 481, "total_fragments": 614, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.17", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.77", "num_clustered_genomes": 7, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": 2174775.0, "gc_content": 36.77, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__Erysipelotrichales", "f__Erysipelotrichaceae", "g__Holdemanella", "s__Holdemanella hominis" ], "_genome_taxon": [ "uncultured", "Solobacterium", "sp.", "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__Erysipelotrichales", "f__Erysipelotrichaceae", "g__Holdemanella", "s__Holdemanella hominis", "Bacteria", "Bacillota", "I", "Bacilli", "A", "Erysipelotrichales", "Erysipelotrichaceae", "Holdemanella", "Holdemanella", "hominis" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }