{
    "type": "genome",
    "identifier": "GCA_947002625.1",
    "organism": "uncultured Lactobacillus sp.",
    "title": "uncultured Lactobacillus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_947002625.1",
        "bioproject": "PRJEB55618",
        "biosample": "SAMEA111396698",
        "wgs_master": "CAMQLL000000000.1",
        "refseq_category": "na",
        "taxid": "153152",
        "species_taxid": "153152",
        "organism_name": "uncultured Lactobacillus sp.",
        "infraspecific_name": "",
        "isolate": "SRR19715297_bin.9_metawrap_v1.3_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/02",
        "asm_name": "SRR19715297_bin.9_metawrap_v1.3_MAG",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/002/625/GCA_947002625.1_SRR19715297_bin.9_metawrap_v1.3_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-02",
    "dateModified": "2022-10-02",
    "datePublished": "2022-10-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Lactobacillus sp."
        ],
        "sample_taxid": [
            "153152"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.613 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2134925",
        "Number of Sequences": "77",
        "Longest Sequences (bp)": "127142",
        "N50 (bp)": "43077",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.5",
        "Number of CDSs": "2104",
        "Average Protein Length": "297.6",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Limosilactobacillus reuteri subsp. murium",
                "strain": "strain=lpuph1",
                "accession": "GCA_000179455.1",
                "taxid": 863368,
                "species_taxid": 1598,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.9612,
                "matched_fragments": 538,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus reuteri subsp. reuteri",
                "strain": "strain=DSM 20016",
                "accession": "GCA_001434615.1",
                "taxid": 557436,
                "species_taxid": 1598,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.0265,
                "matched_fragments": 491,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus reuteri subsp. reuteri",
                "strain": "strain=DSM 20016",
                "accession": "GCA_000016825.1",
                "taxid": 557436,
                "species_taxid": 1598,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.9895,
                "matched_fragments": 510,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus reuteri subsp. reuteri",
                "strain": "strain=JCM 1112",
                "accession": "GCA_000010005.1",
                "taxid": 557436,
                "species_taxid": 1598,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.8465,
                "matched_fragments": 512,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus reuteri subsp. suis",
                "strain": "strain=ATCC 53608",
                "accession": "GCA_000236455.2",
                "taxid": 927703,
                "species_taxid": 1598,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.4209,
                "matched_fragments": 502,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus reuteri subsp. rodentium",
                "strain": "strain=100-23",
                "accession": "GCA_000168255.1",
                "taxid": 349123,
                "species_taxid": 1598,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.2265,
                "matched_fragments": 560,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus balticus",
                "strain": "strain=BG-AF3-A",
                "accession": "GCA_014145615.1",
                "taxid": 2759747,
                "species_taxid": 2759747,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.1176,
                "matched_fragments": 522,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus avistercoris",
                "strain": "strain=Sa3CUN2",
                "accession": "GCA_014836425.1",
                "taxid": 2762243,
                "species_taxid": 2762243,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6416,
                "matched_fragments": 164,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000016825.1",
                "gtdb_species": "s__Limosilactobacillus reuteri",
                "ani": 95.9613,
                "matched_fragments": 511,
                "total_fragments": 672,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.73",
                "min_intra_species_ani": "95.25",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 135,
                "status": "conclusive"
            },
            {
                "accession": "GCF_013694365.1",
                "gtdb_species": "s__Limosilactobacillus reuteri_E",
                "ani": 94.3748,
                "matched_fragments": 488,
                "total_fragments": 672,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.28",
                "min_intra_species_ani": "96.40",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 58,
                "status": "-"
            },
            {
                "accession": "GCA_003072625.1",
                "gtdb_species": "s__Limosilactobacillus reuteri_D",
                "ani": 94.2711,
                "matched_fragments": 502,
                "total_fragments": 672,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.43",
                "min_intra_species_ani": "95.30",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 32,
                "status": "-"
            },
            {
                "accession": "GCF_014145615.1",
                "gtdb_species": "s__Limosilactobacillus balticus",
                "ani": 93.1176,
                "matched_fragments": 522,
                "total_fragments": 672,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.51",
                "min_intra_species_ani": "98.51",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014145585.1",
                "gtdb_species": "s__Limosilactobacillus agrestis",
                "ani": 90.5039,
                "matched_fragments": 494,
                "total_fragments": 672,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.60",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.148,
        "cell_length": 0.354,
        "doubling_h": -0.086,
        "growth_tmp": 32.808,
        "optimum_tmp": 31.646,
        "optimum_ph": 6.027,
        "genome_size": 2295637.558,
        "gc_content": 40.393,
        "coding_genes": 2119.007,
        "rRNA16S_genes": 5.074,
        "tRNA_genes": 63.614,
        "gram_stain": 1.0,
        "sporulation": 0.009,
        "motility": 0.08,
        "range_salinity": 0.0,
        "facultative_respiration": 0.155,
        "anaerobic_respiration": 0.175,
        "aerobic_respiration": 0.668,
        "mesophilic_range_tmp": 0.977,
        "thermophilic_range_tmp": 0.022,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.983,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.016,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Limosilactobacillus",
        "s__Limosilactobacillus reuteri_G"
    ],
    "_genome_taxon": [
        "uncultured",
        "Lactobacillus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Limosilactobacillus",
        "s__Limosilactobacillus reuteri_G",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Lactobacillaceae",
        "Limosilactobacillus",
        "Limosilactobacillus",
        "reuteri",
        "G"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}