{ "type": "genome", "identifier": "GCA_947003005.1", "organism": "uncultured Collinsella sp.", "title": "uncultured Collinsella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947003005.1", "bioproject": "PRJEB55618", "biosample": "SAMEA111396782", "wgs_master": "CAMQMT000000000.1", "refseq_category": "na", "taxid": "165190", "species_taxid": "165190", "organism_name": "uncultured Collinsella sp.", "infraspecific_name": "", "isolate": "SRR19721630_bin.5_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/02", "asm_name": "SRR19721630_bin.5_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/003/005/GCA_947003005.1_SRR19721630_bin.5_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-02", "dateModified": "2022-10-02", "datePublished": "2022-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Collinsella sp." ], "sample_taxid": [ "165190" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.642 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2245525", "Number of Sequences": "106", "Longest Sequences (bp)": "88946", "N50 (bp)": "30562", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.8", "Number of CDSs": "1979", "Average Protein Length": "323.9", "Coding Ratio (%)": "85.6", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Collinsella aerofaciens", "strain": "strain=NCTC11838", "accession": "GCA_900461335.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 94.6527, "matched_fragments": 595, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=ATCC 25986", "accession": "GCA_000169035.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 94.6338, "matched_fragments": 592, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=JCM 10188", "accession": "GCA_010509075.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 94.6296, "matched_fragments": 587, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella bouchesdurhonensis", "strain": "strain=Marseille-P3296", "accession": "GCA_900155365.1", "taxid": 1907654, "species_taxid": 1907654, "relation_to_type": "type", "validated": true, "ani": 80.3717, "matched_fragments": 234, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella intestinalis", "strain": "strain=DSM 13280", "accession": "GCA_000156175.1", "taxid": 147207, "species_taxid": 147207, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7459, "matched_fragments": 220, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella stercoris", "strain": "strain=DSM 13279", "accession": "GCA_025149625.1", "taxid": 147206, "species_taxid": 147206, "relation_to_type": "type", "validated": true, "ani": 79.6691, "matched_fragments": 267, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella phocaeensis", "strain": "strain=Marseille-P3245", "accession": "GCA_900119895.1", "taxid": 1871016, "species_taxid": 1871016, "relation_to_type": "type", "validated": true, "ani": 79.5893, "matched_fragments": 239, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella tanakaei", "strain": "strain=YIT 12063", "accession": "GCA_000225705.1", "taxid": 626935, "species_taxid": 626935, "relation_to_type": "suspected-type", "validated": true, "ani": 79.5471, "matched_fragments": 234, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma burkinafasonensis", "strain": "strain=Marseille-P9525", "accession": "GCA_902150035.1", "taxid": 2590867, "species_taxid": 2590867, "relation_to_type": "type", "validated": true, "ani": 79.3885, "matched_fragments": 226, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma timonensis", "strain": "strain=GD5", "accession": "GCA_000321165.1", "taxid": 1232436, "species_taxid": 1232436, "relation_to_type": "type", "validated": true, "ani": 78.8603, "matched_fragments": 210, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005844325.1", "gtdb_species": "s__Collinsella aerofaciens_G", "ani": 96.0413, "matched_fragments": 581, "total_fragments": 691, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella", "ani_circumscription_radius": 95.009, "mean_intra_species_ani": "96.00", "min_intra_species_ani": "95.07", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 20, "status": "inconclusive" }, { "accession": "GCF_015560765.1", "gtdb_species": "s__Collinsella aerofaciens_M", "ani": 95.6792, "matched_fragments": 579, "total_fragments": 691, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella", "ani_circumscription_radius": 95.1158, "mean_intra_species_ani": "96.04", "min_intra_species_ani": "95.15", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.78", "num_clustered_genomes": 15, "status": "inconclusive" }, { "accession": "GCA_008671135.1", "gtdb_species": "s__Collinsella aerofaciens_J", "ani": 95.2191, "matched_fragments": 579, "total_fragments": 691, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella", "ani_circumscription_radius": 95.2147, "mean_intra_species_ani": "97.21", "min_intra_species_ani": "95.28", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.82", "num_clustered_genomes": 6, "status": "inconclusive" }, { "accession": "GCA_900541235.1", "gtdb_species": "s__Collinsella sp900541235", "ani": 95.1311, "matched_fragments": 563, "total_fragments": 691, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.02", "min_intra_species_ani": "95.02", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "inconclusive" }, { "accession": "GCA_900551365.1", "gtdb_species": "s__Collinsella sp900551365", "ani": 95.0193, "matched_fragments": 480, "total_fragments": 691, 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"d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.49", "min_intra_species_ani": "95.11", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.77", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900544865.1", "gtdb_species": "s__Collinsella sp900544865", "ani": 94.8843, "matched_fragments": 540, "total_fragments": 691, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900541065.1", "gtdb_species": "s__Collinsella sp900541065", "ani": 94.8664, "matched_fragments": 580, "total_fragments": 691, "gtdb_taxonomy": 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