{ "type": "genome", "identifier": "GCA_947003015.1", "organism": "Collinsella stercoris", "title": "Collinsella stercoris", "description": "derived from metagenome; incomplete metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947003015.1", "bioproject": "PRJEB55618", "biosample": "SAMEA111396755", "wgs_master": "CAMQMS000000000.1", "refseq_category": "na", "taxid": "147206", "species_taxid": "147206", "organism_name": "Collinsella stercoris", "infraspecific_name": "", "isolate": "SRR19721626_bin.1_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/02", "asm_name": "SRR19721626_bin.1_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/003/015/GCA_947003015.1_SRR19721626_bin.1_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from metagenome; incomplete metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-02", "dateModified": "2022-10-02", "datePublished": "2022-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Collinsella stercoris" ], "sample_taxid": [ "147206" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.557 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1972462", "Number of Sequences": "64", "Longest Sequences (bp)": "135142", "N50 (bp)": "46040", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.9", "Number of CDSs": "1638", "Average Protein Length": "334.9", "Coding Ratio (%)": "83.4", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Collinsella stercoris", "strain": "strain=DSM 13279", "accession": "GCA_025149625.1", "taxid": 147206, "species_taxid": 147206, "relation_to_type": "type", "validated": true, "ani": 95.402, "matched_fragments": 534, "total_fragments": 629, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Collinsella stercoris", "strain": "strain=DSM 13279", "accession": "GCA_000156215.1", "taxid": 147206, "species_taxid": 147206, "relation_to_type": "type", "validated": true, "ani": 95.2481, "matched_fragments": 543, "total_fragments": 629, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Collinsella intestinalis", "strain": "strain=DSM 13280", "accession": "GCA_000156175.1", "taxid": 147207, "species_taxid": 147207, "relation_to_type": "suspected-type", "validated": true, "ani": 83.6491, "matched_fragments": 382, "total_fragments": 629, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella phocaeensis", "strain": "strain=Marseille-P3245", "accession": "GCA_900119895.1", "taxid": 1871016, "species_taxid": 1871016, "relation_to_type": "type", "validated": true, "ani": 82.6144, "matched_fragments": 296, "total_fragments": 629, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=ATCC 25986", "accession": "GCA_000169035.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 81.0809, "matched_fragments": 255, "total_fragments": 629, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=JCM 10188", "accession": "GCA_010509075.1", 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