{ "type": "genome", "identifier": "GCA_947003085.1", "organism": "uncultured Dorea sp.", "title": "uncultured Dorea sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947003085.1", "bioproject": "PRJEB55618", "biosample": "SAMEA111396904", "wgs_master": "CAMQNB000000000.1", "refseq_category": "na", "taxid": "286138", "species_taxid": "286138", "organism_name": "uncultured Dorea sp.", "infraspecific_name": "", "isolate": "SRR19721642_bin.4_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/02", "asm_name": "SRR19721642_bin.4_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/003/085/GCA_947003085.1_SRR19721642_bin.4_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-02", "dateModified": "2022-10-02", "datePublished": "2022-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Dorea sp." ], "sample_taxid": [ "286138" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.641 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 82.95, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2236663", "Number of Sequences": "102", "Longest Sequences (bp)": "114572", "N50 (bp)": "31962", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.9", "Number of CDSs": "2101", "Average Protein Length": "314.9", "Coding Ratio (%)": "88.7", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dorea phocaeensis", "strain": "strain=Marseille-P4003", "accession": "GCA_900240315.1", "taxid": 2040291, "species_taxid": 2040291, "relation_to_type": "type", "validated": true, "ani": 80.1485, "matched_fragments": 242, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalimonas umbilicata", "strain": "strain=EGH7", "accession": "GCA_003402615.1", "taxid": 1912855, "species_taxid": 1912855, "relation_to_type": "type", "validated": true, "ani": 78.0891, "matched_fragments": 103, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalimonas umbilicata", "strain": "strain=DSM 103426", "accession": "GCA_004346095.1", "taxid": 1912855, "species_taxid": 1912855, "relation_to_type": "type", "validated": true, "ani": 78.0119, "matched_fragments": 106, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea longicatena", "strain": "strain=DSM 13814", "accession": "GCA_025150085.1", "taxid": 88431, "species_taxid": 88431, "relation_to_type": "type", "validated": true, "ani": 77.9818, "matched_fragments": 184, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea longicatena", "strain": "strain=DSM 13814", "accession": "GCA_000154065.1", "taxid": 88431, "species_taxid": 88431, "relation_to_type": "type", "validated": true, "ani": 77.9517, "matched_fragments": 180, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] scindens", "strain": "strain=ATCC 35704", "accession": "GCA_004295125.1", "taxid": 29347, "species_taxid": 29347, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8322, "matched_fragments": 133, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea formicigenerans", "strain": "strain=ATCC 27755", "accession": "GCA_000169235.1", "taxid": 39486, "species_taxid": 39486, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8199, "matched_fragments": 146, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] scindens", "strain": "strain=ATCC 35704", "accession": "GCA_000154505.1", "taxid": 29347, "species_taxid": 29347, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8162, "matched_fragments": 132, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea formicigenerans", "strain": "strain=ATCC 27755", "accession": "GCA_025150245.1", "taxid": 39486, "species_taxid": 39486, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7742, "matched_fragments": 145, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] hylemonae", "strain": "strain=DSM 15053", "accession": "GCA_008281175.1", "taxid": 89153, "species_taxid": 89153, "relation_to_type": "type", "validated": true, "ani": 77.6693, "matched_fragments": 142, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus comes", "strain": "strain=ATCC 27758", "accession": "GCA_025149785.1", "taxid": 410072, "species_taxid": 410072, "relation_to_type": "type", "validated": true, "ani": 77.6415, "matched_fragments": 118, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_025152405.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 77.599, "matched_fragments": 101, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Merdimonas faecis", "strain": "strain=BR31", "accession": "GCA_001754075.1", "taxid": 1653435, "species_taxid": 1653435, "relation_to_type": "type", "validated": true, "ani": 77.5843, "matched_fragments": 136, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] hylemonae", "strain": "strain=DSM 15053", "accession": "GCA_000156515.1", "taxid": 89153, "species_taxid": 89153, "relation_to_type": "type", "validated": true, "ani": 77.5617, "matched_fragments": 142, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter butyricigenes", "strain": "strain=KCTC 15684", "accession": "GCA_003574295.1", "taxid": 2316025, "species_taxid": 2316025, "relation_to_type": "type", "validated": true, "ani": 77.4674, "matched_fragments": 106, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter massiliensis", "strain": "strain=Marseille-P2086", "accession": "GCA_001487105.1", "taxid": 1720300, "species_taxid": 1720300, "relation_to_type": "type", "validated": true, "ani": 77.3992, "matched_fragments": 83, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_025152275.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "type", "validated": true, "ani": 77.3978, "matched_fragments": 126, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=JCM6515", "accession": "GCA_008121495.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3966, "matched_fragments": 126, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus phoceensis", "strain": "strain=Marseille-P3062", "accession": "GCA_900104635.1", "taxid": 1870993, "species_taxid": 1870993, "relation_to_type": "type", "validated": true, "ani": 77.2114, "matched_fragments": 119, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jingyaoa shaoxingensis", "strain": "strain=NSJ-46", "accession": "GCA_014385005.1", "taxid": 2763671, "species_taxid": 2763671, "relation_to_type": "type", "validated": true, "ani": 76.9672, "matched_fragments": 61, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sellimonas intestinalis", "strain": "strain=BR72", "accession": "GCA_001280875.1", "taxid": 1653434, "species_taxid": 1653434, "relation_to_type": "type", "validated": true, "ani": 76.9393, "matched_fragments": 77, "total_fragments": 689, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 82.95, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000433535.1", "gtdb_species": "s__CAG-317 sp000433535", "ani": 97.8553, "matched_fragments": 585, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-317", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.49", "min_intra_species_ani": "98.19", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_900543415.1", "gtdb_species": "s__CAG-317 sp900543415", "ani": 94.2201, "matched_fragments": 553, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-317", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "95.87", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.78", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900240315.1", "gtdb_species": "s__Dorea_B phocaeensis", "ani": 80.1439, "matched_fragments": 241, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Dorea_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.22", "min_intra_species_ani": "97.28", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.81", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_003435815.1", "gtdb_species": "s__CAG-317 sp000433215", "ani": 78.8849, "matched_fragments": 207, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-317", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.71", "min_intra_species_ani": "98.41", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_910578495.1", "gtdb_species": "s__CAG-317 sp910578495", "ani": 78.4925, "matched_fragments": 250, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-317", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910578865.1", "gtdb_species": "s__CAG-317 sp011960265", "ani": 78.2734, "matched_fragments": 185, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-317", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "99.18", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016295505.1", "gtdb_species": "s__Dorea_A sp016295505", "ani": 77.9791, "matched_fragments": 135, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Dorea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000154065.1", "gtdb_species": "s__Dorea_A longicatena", "ani": 77.9517, "matched_fragments": 180, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Dorea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "97.61", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.69", "num_clustered_genomes": 49, "status": "-" }, { "accession": "GCF_001404875.1", "gtdb_species": "s__Dorea_A longicatena_B", "ani": 77.9132, "matched_fragments": 180, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Dorea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.75", "min_intra_species_ani": "96.72", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.69", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCA_900550865.1", "gtdb_species": "s__Dorea_A sp900550865", "ani": 77.8811, "matched_fragments": 146, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Dorea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004295125.1", "gtdb_species": "s__Clostridium_AP scindens", "ani": 77.8322, "matched_fragments": 133, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_AP", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.44", "min_intra_species_ani": "99.12", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.78", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCA_000509125.1", "gtdb_species": "s__Clostridium_AP sp000509125", "ani": 77.7722, "matched_fragments": 131, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_AP", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_002492335.1", "gtdb_species": "s__UBA7109 sp002492335", "ani": 77.6964, "matched_fragments": 113, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA7109", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013300725.1", "gtdb_species": "s__Bariatricus comes_A", "ani": 77.604, "matched_fragments": 121, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Bariatricus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "98.85", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900553355.1", "gtdb_species": "s__Merdimonas sp900553355", "ani": 77.4686, "matched_fragments": 135, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Merdimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910575605.1", "gtdb_species": "s__UBA7109 sp910575605", "ani": 77.4163, "matched_fragments": 123, "total_fragments": 689, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA7109", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.27", "min_intra_species_ani": "99.27", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.199, "cell_length": 0.301, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 3492665.666, "gc_content": 40.912, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Dorea_D", "s__Dorea_D sp000433535" ], "_genome_taxon": [ "uncultured", "Dorea", "sp.", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Dorea_D", "s__Dorea_D sp000433535", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Dorea", "D", "Dorea", "D", "sp000433535" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }