{ "type": "genome", "identifier": "GCA_947039335.1", "organism": "uncultured Porphyromonadaceae bacterium", "title": "uncultured Porphyromonadaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947039335.1", "bioproject": "PRJEB55709", "biosample": "SAMEA111423459", "wgs_master": "CAMQYN000000000.1", "refseq_category": "na", "taxid": "348578", "species_taxid": "348578", "organism_name": "uncultured Porphyromonadaceae bacterium", "infraspecific_name": "", "isolate": "ERR8099102_bin.11_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/08", "asm_name": "ERR8099102_bin.11_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/039/335/GCA_947039335.1_ERR8099102_bin.11_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-08", "dateModified": "2022-10-08", "datePublished": "2022-10-08", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Porphyromonadaceae bacterium" ], "sample_taxid": [ "348578" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.829 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2875668", "Number of Sequences": "64", "Longest Sequences (bp)": "175788", "N50 (bp)": "72743", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.2", "Number of CDSs": "2337", "Average Protein Length": "366.4", "Coding Ratio (%)": "89.3", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Duncaniella muris", "strain": "strain=DSM 103720", "accession": "GCA_003024805.1", "taxid": 2094150, "species_taxid": 2094150, "relation_to_type": "type", "validated": true, "ani": 81.5411, "matched_fragments": 72, "total_fragments": 926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muribaculum intestinale", "strain": "strain=YL27", "accession": "GCA_001688845.2", "taxid": 1796646, "species_taxid": 1796646, "relation_to_type": "type", "validated": true, "ani": 80.847, "matched_fragments": 70, "total_fragments": 926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muribaculum intestinale", "strain": "strain=YL27", "accession": "GCA_016696845.1", "taxid": 1796646, "species_taxid": 1796646, "relation_to_type": "type", "validated": true, "ani": 80.7779, "matched_fragments": 67, "total_fragments": 926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muribaculum intestinale", "strain": "strain=YL27", "accession": "GCA_002201515.1", "taxid": 1796646, "species_taxid": 1796646, "relation_to_type": "type", "validated": true, "ani": 80.5965, "matched_fragments": 72, "total_fragments": 926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duncaniella dubosii", "strain": "strain=H5", "accession": "GCA_004803915.1", "taxid": 2518971, "species_taxid": 2518971, "relation_to_type": "type", "validated": true, "ani": 78.9164, "matched_fragments": 52, "total_fragments": 926, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003833075.1", "gtdb_species": "s__CAG-485 sp002362485", "ani": 99.1311, "matched_fragments": 843, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.88", "min_intra_species_ani": "97.97", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 18, "status": "conclusive" }, { "accession": "GCA_910585285.1", "gtdb_species": "s__CAG-485 sp910585285", "ani": 79.5891, "matched_fragments": 375, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910584055.1", "gtdb_species": "s__CAG-485 sp910584055", "ani": 79.1626, "matched_fragments": 371, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910579845.1", "gtdb_species": "s__CAG-485 sp910579845", "ani": 78.7755, "matched_fragments": 145, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910578075.1", "gtdb_species": "s__CAG-485 sp910578075", "ani": 78.6656, "matched_fragments": 274, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014802175.1", "gtdb_species": "s__CAG-485 sp014802175", "ani": 78.5751, "matched_fragments": 174, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.58", "min_intra_species_ani": "97.46", "mean_intra_species_af": "0.67", "min_intra_species_af": "0.65", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_910573745.1", "gtdb_species": "s__CAG-485 sp002361215", "ani": 78.379, "matched_fragments": 87, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "98.98", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_900549375.1", "gtdb_species": "s__CAG-485 sp900549375", "ani": 78.2993, "matched_fragments": 167, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.66", "min_intra_species_ani": "96.66", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_009775355.1", "gtdb_species": "s__CAG-485 sp009775355", "ani": 77.6735, "matched_fragments": 122, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.73", "min_intra_species_ani": "98.73", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014867205.1", "gtdb_species": "s__CAG-485 sp014867205", "ani": 77.3351, "matched_fragments": 93, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910578385.1", "gtdb_species": "s__CAG-485 sp910578385", "ani": 77.277, "matched_fragments": 114, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910585275.1", "gtdb_species": "s__CAG-485 sp910585275", "ani": 76.9709, "matched_fragments": 106, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014801585.1", "gtdb_species": "s__CAG-485 sp014801585", "ani": 76.8021, "matched_fragments": 55, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.82", "min_intra_species_ani": "97.82", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002361155.1", "gtdb_species": "s__CAG-485 sp002361155", "ani": 76.7374, "matched_fragments": 60, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.36", "min_intra_species_ani": "98.51", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.74", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_910589425.1", "gtdb_species": "s__CAG-485 sp910589425", "ani": 76.2869, "matched_fragments": 66, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900554845.1", "gtdb_species": "s__CAG-485 sp900554845", "ani": 75.9417, "matched_fragments": 53, "total_fragments": 926, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.47", "min_intra_species_ani": "97.47", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.296, "cell_length": 0.109, "doubling_h": 0.809, "growth_tmp": 36.714, "optimum_tmp": 36.937, "optimum_ph": 7.462, "genome_size": 2637645.685, "gc_content": 46.475, "coding_genes": 2143.52, "rRNA16S_genes": 2.5, "tRNA_genes": 49.6, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.1, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Muribaculaceae", "g__Lepagella", "s__Lepagella muris_A" ], "_genome_taxon": [ "uncultured", "Porphyromonadaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Muribaculaceae", "g__Lepagella", "s__Lepagella muris_A", "Bacteria", "Bacteroidota", "Bacteroidia", "Bacteroidales", "Muribaculaceae", "Lepagella", "Lepagella", "muris", "A" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }