{ "type": "genome", "identifier": "GCA_947039645.1", "organism": "uncultured Fusobacteriaceae bacterium", "title": "uncultured Fusobacteriaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947039645.1", "bioproject": "PRJEB49856", "biosample": "SAMEA111426097", "wgs_master": "CAMQZJ000000000.1", "refseq_category": "na", "taxid": "575416", "species_taxid": "575416", "organism_name": "uncultured Fusobacteriaceae bacterium", "infraspecific_name": "", "isolate": "ERR2856159_bin.4_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/07", "asm_name": "ERR2856159_bin.4_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/039/645/GCA_947039645.1_ERR2856159_bin.4_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-07", "dateModified": "2022-10-07", "datePublished": "2022-10-07", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Fusobacteriaceae bacterium" ], "sample_taxid": [ "575416" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.334 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 80.21, "contamination": 0.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1219206", "Number of Sequences": "211", "Longest Sequences (bp)": "22501", "N50 (bp)": "6386", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.4", "Number of CDSs": "1002", "Average Protein Length": "292.9", "Coding Ratio (%)": "72.2", "Number of rRNAs": "0", "Number of tRNAs": "14", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fusobacterium necrogenes", "strain": "strain=NCTC10723", "accession": "GCA_900450765.1", "taxid": 858, "species_taxid": 858, "relation_to_type": "type", "validated": true, "ani": 76.7489, "matched_fragments": 55, "total_fragments": 300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium hwasookii", "strain": "strain=ChDC F128", "accession": "GCA_000292935.1", "taxid": 1583098, "species_taxid": 1583098, "relation_to_type": "type", "validated": true, "ani": 76.6586, "matched_fragments": 52, "total_fragments": 300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium hwasookii", "strain": "strain=KCOM 1249", "accession": "GCA_014217355.1", "taxid": 1583098, "species_taxid": 1583098, "relation_to_type": "type", "validated": true, "ani": 76.6139, "matched_fragments": 50, "total_fragments": 300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium canifelinum", "strain": "strain=FDAARGOS_1126", "accession": "GCA_016724785.1", "taxid": 285729, "species_taxid": 285729, "relation_to_type": "type", "validated": true, "ani": 76.4861, "matched_fragments": 55, "total_fragments": 300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium nucleatum subsp. polymorphum", "strain": "strain=ATCC 10953", "accession": "GCA_000153625.1", "taxid": 76857, "species_taxid": 851, "relation_to_type": "type", "validated": true, "ani": 76.3614, "matched_fragments": 56, "total_fragments": 300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium nucleatum subsp. polymorphum", "strain": "strain=NCTC10562", "accession": "GCA_001457555.1", "taxid": 76857, "species_taxid": 851, "relation_to_type": "type", "validated": true, "ani": 76.3151, "matched_fragments": 56, "total_fragments": 300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium perfoetens", "strain": "strain=ATCC 29250", "accession": "GCA_000622245.1", "taxid": 852, "species_taxid": 852, "relation_to_type": "type", "validated": true, "ani": 76.2335, "matched_fragments": 68, "total_fragments": 300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium ulcerans", "strain": "strain=ATCC 49185", "accession": "GCA_003019675.1", "taxid": 861, "species_taxid": 861, "relation_to_type": "type", "validated": true, "ani": 76.0244, "matched_fragments": 51, "total_fragments": 300, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 80.21, "contamination": 0.38, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017984315.1", "gtdb_species": "s__JAGNZR01 sp017984315", "ani": 76.9437, "matched_fragments": 55, "total_fragments": 300, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__JAGNZR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "99.23", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014250685.1", "gtdb_species": "s__Cetobacterium sp014250685", "ani": 76.8958, "matched_fragments": 72, "total_fragments": 300, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Cetobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905193685.1", "gtdb_species": "s__Fusobacterium_A sp900555485", "ani": 76.7581, "matched_fragments": 66, "total_fragments": 300, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900766645.1", "gtdb_species": "s__Cetobacterium_A sp900766645", "ani": 76.5715, "matched_fragments": 59, "total_fragments": 300, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Cetobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000007325.1", "gtdb_species": "s__Fusobacterium nucleatum", "ani": 76.346, "matched_fragments": 61, "total_fragments": 300, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.30", "min_intra_species_ani": "95.23", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.85", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_012843705.1", "gtdb_species": "s__Fusobacterium_B sp012843705", "ani": 76.304, "matched_fragments": 64, "total_fragments": 300, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000622245.1", "gtdb_species": "s__Fusobacterium_B perfoetens", "ani": 76.2335, "matched_fragments": 68, "total_fragments": 300, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002356455.1", "gtdb_species": "s__Fusobacterium_A varium_A", "ani": 76.117, "matched_fragments": 67, "total_fragments": 300, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.56", "min_intra_species_ani": "99.56", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": 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"f__Fusobacteriaceae", "g__JAGNZR01", "s__JAGNZR01 sp947038515", "Bacteria", "Fusobacteriota", "Fusobacteriia", "Fusobacteriales", "Fusobacteriaceae", "JAGNZR01", "JAGNZR01", "sp947038515" ], "_meo": [ { "id": "MEO_0000468", "label": "gut" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }