{ "type": "genome", "identifier": "GCA_947040025.1", "organism": "Aliivibrio salmonicida", "title": "Aliivibrio salmonicida", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947040025.1", "bioproject": "PRJEB49856", "biosample": "SAMEA111426095", "wgs_master": "CAMRAK000000000.1", "refseq_category": "na", "taxid": "40269", "species_taxid": "40269", "organism_name": "Aliivibrio salmonicida", "infraspecific_name": "", "isolate": "ERR2856152_bin.2_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/08", "asm_name": "ERR2856152_bin.2_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/040/025/GCA_947040025.1_ERR2856152_bin.2_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-08", "dateModified": "2022-10-08", "datePublished": "2022-10-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Aliivibrio salmonicida" ], "sample_taxid": [ "40269" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "1.263 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4433865", "Number of Sequences": "39", "Longest Sequences (bp)": "419145", "N50 (bp)": "197885", "Gap Ratio 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"GCA_016464335.1", "taxid": 668, "species_taxid": 668, "relation_to_type": "suspected-type", "validated": true, "ani": 82.1284, "matched_fragments": 829, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliivibrio fischeri", "strain": "strain=DSM 507", "accession": "GCA_023983475.1", "taxid": 668, "species_taxid": 668, "relation_to_type": "suspected-type", "validated": true, "ani": 82.0727, "matched_fragments": 858, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio celticus", "strain": "strain=CECT 7224", "accession": "GCA_024347335.1", "taxid": 446372, "species_taxid": 446372, "relation_to_type": "type", "validated": true, "ani": 78.8492, "matched_fragments": 268, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio splendidus", "strain": "strain=LMG 19031", "accession": "GCA_024347615.1", "taxid": 29497, "species_taxid": 29497, 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175, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 78.3149, "matched_fragments": 178, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=LBS 2", "accession": "GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 78.2809, "matched_fragments": 185, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium sanguinicancri", "strain": "strain=CECT 7579", "accession": "GCA_024346675.1", "taxid": 875932, "species_taxid": 875932, "relation_to_type": "type", "validated": true, "ani": 78.0617, "matched_fragments": 229, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio thalassae", "strain": "strain=CECT8203", "accession": "GCA_900089835.1", "taxid": 1243014, "species_taxid": 1243014, "relation_to_type": "type", "validated": true, "ani": 77.9894, "matched_fragments": 176, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium aquimaris", "strain": "strain=DSM 23343", "accession": "GCA_003025415.1", "taxid": 512643, "species_taxid": 512643, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6938, "matched_fragments": 228, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000196495.1", "gtdb_species": "s__Aliivibrio salmonicida_A", "ani": 97.41, "matched_fragments": 1184, "total_fragments": 1460, "gtdb_taxonomy": 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