{ "type": "genome", "identifier": "GCA_947040295.1", "organism": "uncultured Lachnoclostridium sp.", "title": "uncultured Lachnoclostridium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947040295.1", "bioproject": "PRJEB55708", "biosample": "SAMEA111406165", "wgs_master": "CAMRBE000000000.1", "refseq_category": "na", "taxid": "1586779", "species_taxid": "1586779", "organism_name": "uncultured Lachnoclostridium sp.", "infraspecific_name": "", "isolate": "ERR5647207_bin.1_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/07", "asm_name": "ERR5647207_bin.1_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/040/295/GCA_947040295.1_ERR5647207_bin.1_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-07", "dateModified": "2022-10-07", "datePublished": "2022-10-07", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lachnoclostridium sp." ], "sample_taxid": [ "1586779" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.526 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 76.33, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1859415", "Number of Sequences": "426", "Longest Sequences (bp)": "16196", "N50 (bp)": "4483", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.1", "Number of CDSs": "1371", "Average Protein Length": "323.3", "Coding Ratio (%)": "71.5", "Number of rRNAs": "0", "Number of tRNAs": "12", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 76.33, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_910579085.1", "gtdb_species": "s__Butyribacter sp910579085", "ani": 99.8313, "matched_fragments": 415, "total_fragments": 420, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_910588655.1", "gtdb_species": "s__Butyribacter sp910588655", "ani": 92.3858, "matched_fragments": 362, "total_fragments": 420, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910580005.1", "gtdb_species": "s__Butyribacter sp910580005", "ani": 88.9585, "matched_fragments": 304, "total_fragments": 420, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910586555.1", "gtdb_species": "s__Butyribacter sp910586555", "ani": 84.1922, "matched_fragments": 314, "total_fragments": 420, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910577825.1", "gtdb_species": "s__Butyribacter sp910577825", "ani": 83.9701, "matched_fragments": 297, "total_fragments": 420, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002499945.1", "gtdb_species": "s__Butyribacter sp002499945", "ani": 83.9644, "matched_fragments": 305, "total_fragments": 420, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009774235.1", "gtdb_species": "s__Butyribacter sp009774235", "ani": 81.8899, "matched_fragments": 289, "total_fragments": 420, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "99.07", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.283, "cell_length": 0.216, "doubling_h": null, "growth_tmp": 35.541, "optimum_tmp": 33.5, "optimum_ph": 6.475, "genome_size": 4928424.732, "gc_content": 47.09, "coding_genes": 4359.666, "rRNA16S_genes": 5.0, "tRNA_genes": 65.0, "gram_stain": 0.913, "sporulation": 0.933, "motility": 0.923, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Butyribacter", "s__Butyribacter sp910579085" ], "_genome_taxon": [ "uncultured", "Lachnoclostridium", "sp.", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Butyribacter", "s__Butyribacter sp910579085", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Butyribacter", "Butyribacter", "sp910579085" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }