{
    "type": "genome",
    "identifier": "GCA_947040945.1",
    "organism": "uncultured Spirochaetia bacterium",
    "title": "uncultured Spirochaetia bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_947040945.1",
        "bioproject": "PRJEB49827",
        "biosample": "SAMEA111426163",
        "wgs_master": "CAMRCO000000000.1",
        "refseq_category": "na",
        "taxid": "2563800",
        "species_taxid": "2563800",
        "organism_name": "uncultured Spirochaetia bacterium",
        "infraspecific_name": "",
        "isolate": "ERR3140044_bin.2_metaWRAP_v1.3_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/08",
        "asm_name": "ERR3140044_bin.2_metaWRAP_v1.3_MAG",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/040/945/GCA_947040945.1_ERR3140044_bin.2_metaWRAP_v1.3_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-08",
    "dateModified": "2022-10-08",
    "datePublished": "2022-10-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Spirochaetia bacterium"
        ],
        "sample_taxid": [
            "2563800"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "0.601 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2166423",
        "Number of Sequences": "130",
        "Longest Sequences (bp)": "62183",
        "N50 (bp)": "21540",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "30.7",
        "Number of CDSs": "1991",
        "Average Protein Length": "317.8",
        "Coding Ratio (%)": "87.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Brachyspira alvinipulli",
                "strain": "strain=ATCC 51933",
                "accession": "GCA_000518245.1",
                "taxid": 84379,
                "species_taxid": 84379,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8562,
                "matched_fragments": 79,
                "total_fragments": 655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hyodysenteriae",
                "strain": "strain=B78",
                "accession": "GCA_000383255.1",
                "taxid": 159,
                "species_taxid": 159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7469,
                "matched_fragments": 82,
                "total_fragments": 655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hyodysenteriae",
                "strain": "strain=B-78",
                "accession": "GCA_001676785.2",
                "taxid": 159,
                "species_taxid": 159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7107,
                "matched_fragments": 79,
                "total_fragments": 655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hyodysenteriae",
                "strain": "strain=B78",
                "accession": "GCA_001013005.1",
                "taxid": 159,
                "species_taxid": 159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6953,
                "matched_fragments": 82,
                "total_fragments": 655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira aalborgi",
                "strain": "strain=513A",
                "accession": "GCA_008016455.1",
                "taxid": 29522,
                "species_taxid": 29522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3119,
                "matched_fragments": 60,
                "total_fragments": 655,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000518245.1",
                "gtdb_species": "s__Brachyspira alvinipulli",
                "ani": 75.8378,
                "matched_fragments": 80,
                "total_fragments": 655,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008016535.1",
                "gtdb_species": "s__Brachyspira pilosicoli_A",
                "ani": 75.7265,
                "matched_fragments": 67,
                "total_fragments": 655,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001676785.2",
                "gtdb_species": "s__Brachyspira hyodysenteriae",
                "ani": 75.6938,
                "matched_fragments": 80,
                "total_fragments": 655,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "98.93",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 58,
                "status": "-"
            },
            {
                "accession": "GCA_910588665.1",
                "gtdb_species": "s__Brachyspira sp910588665",
                "ani": 75.5207,
                "matched_fragments": 53,
                "total_fragments": 655,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008016455.1",
                "gtdb_species": "s__Brachyspira aalborgi",
                "ani": 75.3119,
                "matched_fragments": 60,
                "total_fragments": 655,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.81",
                "min_intra_species_ani": "95.36",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 21,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Brachyspirae",
        "o__Brachyspirales",
        "f__Brachyspiraceae",
        "g__CAMQVF01",
        "s__CAMQVF01 sp947040945"
    ],
    "_genome_taxon": [
        "uncultured",
        "Spirochaetia",
        "bacterium",
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Brachyspirae",
        "o__Brachyspirales",
        "f__Brachyspiraceae",
        "g__CAMQVF01",
        "s__CAMQVF01 sp947040945",
        "Bacteria",
        "Spirochaetota",
        "Brachyspirae",
        "Brachyspirales",
        "Brachyspiraceae",
        "CAMQVF01",
        "CAMQVF01",
        "sp947040945"
    ],
    "_meo": [
        {
            "id": "MEO_0000468",
            "label": "gut"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}