<?xml version="1.0" ?>
<BioSampleSet><BioSample access="public" publication_date="2022-10-15T00:00:00.000" last_update="2022-10-16T22:21:21.000" submission_date="2022-10-16T19:05:34.746" id="31308635" accession="SAMEA111477066">   <Ids>     <Id db="BioSample" is_primary="1">SAMEA111477066</Id>     <Id db="SRA">ERS13571102</Id>   </Ids>   <Description>     <Title>Metagenome-assembled genome: SRR13840002_bin.3_metawrap_v1.3_MAG</Title>     <Organism taxonomy_id="820" taxonomy_name="Bacteroides uniformis">       <OrganismName>Bacteroides uniformis</OrganismName>     </Organism>     <Comment>       <Paragraph>This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840002 of study SRP309043.</Paragraph>     </Comment>   </Description>   <Owner>     <Name>EBI</Name>   </Owner>   <Models>     <Model>Generic</Model>   </Models>   <Package display_name="Generic">Generic.1.0</Package>   <Attributes>     <Attribute attribute_name="ENA-CHECKLIST">ERC000047</Attribute>     <Attribute attribute_name="ENA-FIRST-PUBLIC">2022-10-15</Attribute>     <Attribute attribute_name="ENA-LAST-UPDATE">2022-10-15</Attribute>     <Attribute attribute_name="External Id">SAMEA111477066</Attribute>     <Attribute attribute_name="INSDC center alias">EMG</Attribute>     <Attribute attribute_name="INSDC center name">EMG</Attribute>     <Attribute attribute_name="INSDC first public">2022-10-15T20:31:56Z</Attribute>     <Attribute attribute_name="INSDC last update">2022-10-15T20:31:56Z</Attribute>     <Attribute attribute_name="INSDC status">public</Attribute>     <Attribute attribute_name="Submitter Id">SRR13840002_bin.3_metawrap_v1.3_MAG</Attribute>     <Attribute attribute_name="assembly quality">Many fragments with little to no review of assembly other than reporting of standard assembly statistics</Attribute>     <Attribute attribute_name="assembly software">metaSPAdes v3.15.3</Attribute>     <Attribute attribute_name="binning parameters">MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.</Attribute>     <Attribute attribute_name="binning software">metawrap v1.3</Attribute>     <Attribute attribute_name="broad-scale environmental context" harmonized_name="env_broad_scale" display_name="broad-scale environmental context">mouse digestive system</Attribute>     <Attribute attribute_name="broker name">EMG broker account, EMBL-EBI</Attribute>     <Attribute attribute_name="collection date" harmonized_name="collection_date" display_name="collection date">not provided</Attribute>     <Attribute attribute_name="completeness score">97.68</Attribute>     <Attribute attribute_name="completeness software">CheckM</Attribute>     <Attribute attribute_name="contamination score">0.37</Attribute>     <Attribute attribute_name="environmental medium" harmonized_name="env_medium" display_name="environmental medium">feces</Attribute>     <Attribute attribute_name="geographic location (country and/or sea)" harmonized_name="geo_loc_name" display_name="geographic location">USA</Attribute>     <Attribute attribute_name="geographic location (latitude)">not provided</Attribute>     <Attribute attribute_name="geographic location (longitude)">not provided</Attribute>     <Attribute attribute_name="investigation type" harmonized_name="investigation_type" display_name="investigation type">metagenome-assembled genome</Attribute>     <Attribute attribute_name="isolation_source" harmonized_name="isolation_source" display_name="isolation source">mouse gut metagenome</Attribute>     <Attribute attribute_name="local environmental context">digestive tube</Attribute>     <Attribute attribute_name="metagenomic source">mouse gut metagenome</Attribute>     <Attribute attribute_name="project name" harmonized_name="project_name" display_name="project name">The objective of this study was to determine microbial regulation of proteolytic activity in intestinal tract using phenotype of post-infection irritable bowel syndrome, a condition characterized by high fecal proteolytic activity.</Attribute>     <Attribute attribute_name="sample derived from">SAMN18096291</Attribute>     <Attribute attribute_name="sample name" harmonized_name="sample_name" display_name="sample name">SRR13840002_bin.3_metawrap_v1.3_MAG</Attribute>     <Attribute attribute_name="sequencing method">Illumina HiSeq 4000</Attribute>     <Attribute attribute_name="taxonomic classification">The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis</Attribute>     <Attribute attribute_name="taxonomic identity marker">multi-marker approach</Attribute>   </Attributes>   <Status status="live" when="2022-10-17T15:05:46.243"/> </BioSample> </BioSampleSet>
