{ "type": "genome", "identifier": "GCA_947072455.1", "organism": "Lactobacillus gallinarum", "title": "Lactobacillus gallinarum", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947072455.1", "bioproject": "PRJEB56417", "biosample": "SAMEA111477162", "wgs_master": "CAMTIC000000000.1", "refseq_category": "na", "taxid": "52242", "species_taxid": "52242", "organism_name": "Lactobacillus gallinarum", "infraspecific_name": "", "isolate": "ERR5094867_bin.7_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/17", "asm_name": "ERR5094867_bin.7_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/072/455/GCA_947072455.1_ERR5094867_bin.7_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-17", "dateModified": "2022-10-17", "datePublished": "2022-10-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactobacillus gallinarum" ], "sample_taxid": [ "52242" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "0.411 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 66.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1444433", "Number of Sequences": "130", "Longest Sequences (bp)": "57819", "N50 (bp)": "14811", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.6", "Number of CDSs": "1372", "Average Protein Length": "303.7", "Coding Ratio (%)": "86.6", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactobacillus gallinarum", "strain": "strain=DSM 10532", "accession": "GCA_001434975.1", "taxid": 52242, "species_taxid": 52242, "relation_to_type": "type", "validated": true, "ani": 98.4189, "matched_fragments": 389, "total_fragments": 419, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactobacillus helveticus", "strain": "strain=CGMCC 1.1877", "accession": "GCA_001434945.1", "taxid": 1587, "species_taxid": 1587, "relation_to_type": "type", "validated": true, "ani": 89.5805, "matched_fragments": 295, "total_fragments": 419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus helveticus", "strain": "strain=JCM 1120", "accession": "GCA_015698225.1", "taxid": 1587, "species_taxid": 1587, "relation_to_type": "type", "validated": true, "ani": 89.3495, "matched_fragments": 323, "total_fragments": 419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus helveticus", "strain": "strain=DSM 20075", "accession": "GCA_000160855.1", "taxid": 1587, "species_taxid": 1587, "relation_to_type": "type", "validated": true, "ani": 89.2931, "matched_fragments": 352, "total_fragments": 419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus kitasatonis", "strain": "strain=DSM 16761", "accession": "GCA_001434435.1", "taxid": 237446, "species_taxid": 237446, "relation_to_type": "type", "validated": true, "ani": 84.6063, "matched_fragments": 287, "total_fragments": 419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus amylovorus", "strain": "strain=DSM 20531", "accession": "GCA_002706375.1", "taxid": 1604, "species_taxid": 1604, "relation_to_type": "type", "validated": true, "ani": 84.2481, "matched_fragments": 313, "total_fragments": 419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus ultunensis", "strain": "strain=DSM 16047", "accession": "GCA_001436305.1", "taxid": 227945, "species_taxid": 227945, "relation_to_type": "type", "validated": true, "ani": 82.4512, "matched_fragments": 307, "total_fragments": 419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus acidophilus", "strain": "strain=ATCC 4356", "accession": "GCA_000786395.1", "taxid": 1579, "species_taxid": 1579, "relation_to_type": "type", "validated": true, "ani": 82.4145, "matched_fragments": 294, "total_fragments": 419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus intestinalis", "strain": "strain=DSM 6629", "accession": "GCA_024397795.1", "taxid": 151781, "species_taxid": 151781, "relation_to_type": "type", "validated": true, "ani": 79.6829, "matched_fragments": 189, "total_fragments": 419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus laiwuensis", "strain": "strain=F551-2", "accession": "GCA_019972835.1", "taxid": 2841034, "species_taxid": 2841034, "relation_to_type": "type", "validated": true, "ani": 77.3211, "matched_fragments": 74, "total_fragments": 419, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 66.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001434975.1", "gtdb_species": "s__Lactobacillus gallinarum", "ani": 98.4189, "matched_fragments": 389, "total_fragments": 419, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.30", "min_intra_species_ani": "97.84", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 17, "status": "conclusive" }, { "accession": "GCF_000160855.1", "gtdb_species": "s__Lactobacillus helveticus", "ani": 89.252, "matched_fragments": 353, "total_fragments": 419, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "96.37", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.75", "num_clustered_genomes": 146, "status": "-" }, { "accession": "GCF_000615285.1", "gtdb_species": "s__Lactobacillus kitasatonis", "ani": 84.4765, "matched_fragments": 302, "total_fragments": 419, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", 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