{ "type": "genome", "identifier": "GCA_947072995.1", "organism": "uncultured Lachnospiraceae bacterium", "title": "uncultured Lachnospiraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947072995.1", "bioproject": "PRJEB56086", "biosample": "SAMEA111477345", "wgs_master": "CAMTKJ000000000.1", "refseq_category": "na", "taxid": "297314", "species_taxid": "297314", "organism_name": "uncultured Lachnospiraceae bacterium", "infraspecific_name": "", "isolate": "SRR12464006_bin.2_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/18", "asm_name": "SRR12464006_bin.2_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/072/995/GCA_947072995.1_SRR12464006_bin.2_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-18", "dateModified": "2022-10-18", "datePublished": "2022-10-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lachnospiraceae bacterium" ], "sample_taxid": [ "297314" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "1.087 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3812352", "Number of Sequences": "62", "Longest Sequences (bp)": "248826", "N50 (bp)": "89959", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.5", "Number of CDSs": "3332", "Average Protein Length": "338.2", "Coding Ratio (%)": "88.7", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetatifactor muris", "strain": "strain=DSM 23669", "accession": "GCA_024623325.1", "taxid": 879566, "species_taxid": 879566, "relation_to_type": "type", "validated": true, "ani": 77.5129, "matched_fragments": 178, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella massiliensis", "strain": "strain=AT11", "accession": "GCA_900243045.1", "taxid": 1720294, "species_taxid": 1720294, "relation_to_type": "type", "validated": true, "ani": 76.5787, "matched_fragments": 95, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella porci", "strain": "strain=WCA-389-WT-23B", "accession": "GCA_009696275.1", "taxid": 2652274, "species_taxid": 2652274, "relation_to_type": "type", "validated": true, "ani": 76.2897, "matched_fragments": 93, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_011959105.1", "gtdb_species": "s__Acetatifactor sp011959105", "ani": 98.7552, "matched_fragments": 1072, "total_fragments": 1238, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.00", "min_intra_species_ani": "99.00", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "conclusive" }, 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"s__Acetatifactor sp910584375", "ani": 80.248, "matched_fragments": 664, "total_fragments": 1238, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910577235.1", "gtdb_species": "s__Acetatifactor sp910577235", "ani": 80.182, "matched_fragments": 613, "total_fragments": 1238, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014804645.1", "gtdb_species": "s__Acetatifactor sp014804645", "ani": 80.1748, 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"Acetatifactor", "Acetatifactor", "sp011959105" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }