{ "type": "genome", "identifier": "GCA_947074285.1", "organism": "Klebsiella quasipneumoniae", "title": "Klebsiella quasipneumoniae", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947074285.1", "bioproject": "PRJEB56304", "biosample": "SAMEA111477431", "wgs_master": "CAMTPE000000000.1", "refseq_category": "na", "taxid": "1463165", "species_taxid": "1463165", "organism_name": "Klebsiella quasipneumoniae", "infraspecific_name": "", "isolate": "SRR7610118_bin.1_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/18", "asm_name": "SRR7610118_bin.1_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/074/285/GCA_947074285.1_SRR7610118_bin.1_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-18", "dateModified": "2022-10-18", "datePublished": "2022-10-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Klebsiella quasipneumoniae" ], "sample_taxid": [ "1463165" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil" ], "sample_host_location_id": [], "data_size": "1.166 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 29.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4099407", "Number of Sequences": "497", "Longest Sequences (bp)": "44696", "N50 (bp)": "10475", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.7", "Number of CDSs": "3688", "Average Protein Length": "293.1", "Coding Ratio (%)": "79.1", "Number of rRNAs": "0", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Klebsiella quasipneumoniae subsp. similipneumoniae", "strain": "strain=07A044T", "accession": "GCA_020525685.1", "taxid": 1463164, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 98.8929, "matched_fragments": 1062, "total_fragments": 1126, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella quasipneumoniae subsp. similipneumoniae", "strain": "strain=07A044", "accession": "GCA_000613225.1", "taxid": 1463164, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 98.8859, "matched_fragments": 1053, "total_fragments": 1126, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella quasipneumoniae", "strain": "strain=DSM 28211", "accession": "GCA_020115515.1", "taxid": 1463165, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 96.3246, "matched_fragments": 1026, "total_fragments": 1126, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella quasipneumoniae", "strain": "strain=FDAARGOS_1503", "accession": "GCA_020099175.1", "taxid": 1463165, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 96.3197, "matched_fragments": 1035, "total_fragments": 1126, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella quasipneumoniae subsp. quasipneumoniae", "strain": "strain=01A030T", "accession": "GCA_020525925.1", "taxid": 1667327, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 96.3175, "matched_fragments": 1032, "total_fragments": 1126, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=PartO-Kpneumoniae-RM8376", "accession": "GCA_022869665.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 93.7779, "matched_fragments": 1015, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 81.5688, "matched_fragments": 652, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 81.4698, "matched_fragments": 650, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 81.2384, "matched_fragments": 639, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=MTCC 1658", "accession": "GCA_000312465.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 81.0377, "matched_fragments": 581, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=NBRC 12681", "accession": "GCA_000759735.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 81.0132, "matched_fragments": 574, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter portucalensis", "strain": "strain=A60", "accession": "GCA_002042885.1", "taxid": 1639133, "species_taxid": 1639133, "relation_to_type": "type", "validated": true, "ani": 80.9966, "matched_fragments": 578, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=ATCC 8090", "accession": "GCA_000734905.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 80.9718, "matched_fragments": 561, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=ATCC 8090", "accession": "GCA_011064845.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 80.9523, "matched_fragments": 579, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia pneumoniae", "strain": "strain=49125", 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