{ "type": "genome", "identifier": "GCA_947074295.1", "organism": "uncultured Bacteroides sp.", "title": "uncultured Bacteroides sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947074295.1", "bioproject": "PRJEB56304", "biosample": "SAMEA111477430", "wgs_master": "CAMTPC000000000.1", "refseq_category": "na", "taxid": "162156", "species_taxid": "162156", "organism_name": "uncultured Bacteroides sp.", "infraspecific_name": "", "isolate": "SRR7610115_bin.3_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/18", "asm_name": "SRR7610115_bin.3_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/074/295/GCA_947074295.1_SRR7610115_bin.3_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-18", "dateModified": "2022-10-18", "datePublished": "2022-10-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Bacteroides sp." ], "sample_taxid": [ "162156" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil" ], "sample_host_location_id": [], "data_size": "1.073 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3728022", "Number of Sequences": "231", "Longest Sequences (bp)": "78130", "N50 (bp)": "25147", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.8", "Number of CDSs": "2669", "Average Protein Length": "383.0", "Coding Ratio (%)": "82.3", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacteroides nordii", "strain": "strain=FDAARGOS_1461", "accession": "GCA_019930665.1", "taxid": 291645, "species_taxid": 291645, "relation_to_type": "type", "validated": true, "ani": 77.2379, "matched_fragments": 91, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides caccae", "strain": "strain=FDAARGOS_1097", "accession": "GCA_016726305.1", "taxid": 47678, "species_taxid": 47678, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8846, "matched_fragments": 81, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides caccae", "strain": "strain=ATCC 43185", "accession": "GCA_000169015.1", "taxid": 47678, "species_taxid": 47678, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8836, "matched_fragments": 82, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides caccae", "strain": "strain=ATCC 43185", "accession": "GCA_002959715.1", "taxid": 47678, "species_taxid": 47678, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8516, "matched_fragments": 83, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides graminisolvens", "strain": "strain=DSM 19988", "accession": "GCA_000428125.1", "taxid": 477666, "species_taxid": 477666, "relation_to_type": "type", "validated": true, "ani": 76.551, "matched_fragments": 57, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides graminisolvens", "strain": "strain=JCM 15093", "accession": "GCA_000613825.1", "taxid": 477666, "species_taxid": 477666, "relation_to_type": "type", "validated": true, "ani": 76.5447, "matched_fragments": 56, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides salyersiae", "strain": "strain=DSM 18765", "accession": "GCA_000381365.1", "taxid": 291644, "species_taxid": 291644, "relation_to_type": "type", "validated": true, "ani": 76.5323, "matched_fragments": 95, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides faecichinchillae", "strain": "strain=DSM 26883", "accession": "GCA_900129065.1", "taxid": 871325, "species_taxid": 871325, "relation_to_type": "type", "validated": true, "ani": 76.5235, "matched_fragments": 73, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides faecichinchillae", "strain": "strain=JCM 17102", "accession": "GCA_000614145.1", "taxid": 871325, "species_taxid": 871325, "relation_to_type": "type", "validated": true, "ani": 76.5218, "matched_fragments": 76, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides clarus", "strain": "strain=YIT 12056", "accession": "GCA_000195615.1", "taxid": 626929, "species_taxid": 626929, "relation_to_type": "type", "validated": true, "ani": 76.5176, "matched_fragments": 67, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides bouchesdurhonensis", "strain": "strain=Marseille-P2653", "accession": "GCA_900155865.1", "taxid": 1841855, "species_taxid": 1841855, "relation_to_type": "type", "validated": true, "ani": 76.5161, "matched_fragments": 85, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides intestinalis", "strain": "strain=DSM 17393", "accession": "GCA_000172175.1", "taxid": 329854, "species_taxid": 329854, "relation_to_type": "type", "validated": true, "ani": 76.4886, "matched_fragments": 98, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides neonati", "strain": "strain=MS4", "accession": "GCA_000499785.1", "taxid": 1347393, "species_taxid": 1347393, "relation_to_type": "type", "validated": true, "ani": 76.478, "matched_fragments": 88, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides uniformis", "strain": "strain=ATCC 8492", "accession": "GCA_000154205.1", "taxid": 820, "species_taxid": 820, "relation_to_type": "type", "validated": true, "ani": 76.4719, "matched_fragments": 59, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides faecalis", "strain": "strain=KCTC 15687", "accession": "GCA_003865075.1", "taxid": 2447885, "species_taxid": 2447885, "relation_to_type": "type", "validated": true, "ani": 76.4449, "matched_fragments": 83, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides heparinolyticus", "strain": "strain=DSM 23917", "accession": "GCA_004342845.1", "taxid": 28113, "species_taxid": 28113, "relation_to_type": "type", "validated": true, "ani": 76.3987, "matched_fragments": 61, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercorirosoris", "strain": "strain=DSM 26884", "accession": "GCA_900142015.1", "taxid": 871324, "species_taxid": 871324, "relation_to_type": "type", "validated": true, "ani": 76.3657, "matched_fragments": 82, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides fragilis", "strain": "strain=CCUG4856T", "accession": "GCA_005706655.1", "taxid": 817, "species_taxid": 817, "relation_to_type": "type", "validated": true, "ani": 76.3152, "matched_fragments": 91, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides fragilis", "strain": "strain=FDAARGOS_1512", "accession": "GCA_020097275.1", "taxid": 817, "species_taxid": 817, "relation_to_type": "type", "validated": true, "ani": 76.3152, "matched_fragments": 91, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides fragilis", "strain": "strain=ATCC 25285", "accession": "GCA_001997325.1", "taxid": 817, "species_taxid": 817, "relation_to_type": "type", "validated": true, "ani": 76.3152, "matched_fragments": 91, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercorirosoris", "strain": "strain=JCM 17103", "accession": "GCA_000614165.1", "taxid": 871324, "species_taxid": 871324, "relation_to_type": "type", "validated": true, "ani": 76.3099, "matched_fragments": 83, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides fragilis", "strain": "strain=NCTC 9343", "accession": "GCA_900445515.1", "taxid": 817, "species_taxid": 817, "relation_to_type": "type", "validated": true, "ani": 76.2942, "matched_fragments": 92, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides fragilis", "strain": "strain=NCTC 9343", "accession": "GCA_000025985.1", "taxid": 817, "species_taxid": 817, "relation_to_type": "type", "validated": true, "ani": 76.2939, "matched_fragments": 91, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides congonensis", "strain": "strain=Marseille-P3132", "accession": "GCA_900130125.1", "taxid": 1871006, "species_taxid": 1871006, "relation_to_type": "type", "validated": true, "ani": 76.2922, "matched_fragments": 95, "total_fragments": 1129, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 62.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002222615.2", "gtdb_species": "s__Bacteroides caccae", "ani": 76.8846, "matched_fragments": 81, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.30", "min_intra_species_ani": "98.91", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 77, "status": "-" }, { "accession": "GCA_900766005.1", "gtdb_species": "s__Bacteroides sp900766005", "ani": 76.823, "matched_fragments": 69, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", 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"status": "-" }, { "accession": "GCF_903181435.1", "gtdb_species": "s__Bacteroides sp900765785", "ani": 76.6017, "matched_fragments": 88, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.28", "min_intra_species_ani": "97.12", "mean_intra_species_af": "0.65", "min_intra_species_af": "0.59", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_902388495.1", "gtdb_species": "s__Bacteroides sp902388495", "ani": 76.5534, "matched_fragments": 59, "total_fragments": 1129, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000614145.1", 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