{ "type": "genome", "identifier": "GCA_947088075.1", "organism": "uncultured Eubacterium sp.", "title": "uncultured Eubacterium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947088075.1", "bioproject": "PRJEB56117", "biosample": "SAMEA111491717", "wgs_master": "CAMUFD000000000.1", "refseq_category": "na", "taxid": "165185", "species_taxid": "165185", "organism_name": "uncultured Eubacterium sp.", "infraspecific_name": "", "isolate": "SRR14038237_bin.49_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/22", "asm_name": "SRR14038237_bin.49_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/088/075/GCA_947088075.1_SRR14038237_bin.49_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-22", "dateModified": "2022-10-22", "datePublished": "2022-10-22", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Eubacterium sp." ], "sample_taxid": [ "165185" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.803 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 60.59, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2834624", "Number of Sequences": "279", "Longest Sequences (bp)": "61796", "N50 (bp)": "12824", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.9", "Number of CDSs": "2329", "Average Protein Length": "323.5", "Coding Ratio (%)": "79.8", "Number of rRNAs": "0", "Number of tRNAs": "17", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Schaedlerella arabinosiphila", "strain": "strain=DSM 106076", "accession": "GCA_003885045.1", "taxid": 2044587, "species_taxid": 2044587, "relation_to_type": "type", "validated": true, "ani": 76.4869, "matched_fragments": 57, "total_fragments": 813, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella massiliensis", "strain": "strain=AT11", "accession": "GCA_900243045.1", "taxid": 1720294, "species_taxid": 1720294, "relation_to_type": "type", "validated": true, "ani": 75.5715, "matched_fragments": 54, "total_fragments": 813, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 60.59, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000403845.2", "gtdb_species": "s__14-2 sp000403845", "ani": 98.8237, "matched_fragments": 773, "total_fragments": 813, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_910575555.1", "gtdb_species": "s__14-2 sp011960065", "ani": 80.3241, "matched_fragments": 438, "total_fragments": 813, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.61", "min_intra_species_ani": "97.67", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.76", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_910584585.1", "gtdb_species": "s__14-2 sp910584585", "ani": 79.6392, "matched_fragments": 404, "total_fragments": 813, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004793545.1", "gtdb_species": "s__14-2 sp004793545", "ani": 79.5109, "matched_fragments": 413, "total_fragments": 813, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000403255.2", "gtdb_species": "s__14-2 sp000403255", "ani": 78.9009, "matched_fragments": 345, "total_fragments": 813, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "99.01", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_000403315.2", "gtdb_species": "s__14-2 sp000403315", "ani": 78.4211, "matched_fragments": 342, "total_fragments": 813, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "98.74", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_910575155.1", "gtdb_species": "s__14-2 sp910575155", "ani": 77.6369, "matched_fragments": 230, "total_fragments": 813, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910575075.1", "gtdb_species": "s__14-2 sp910575075", "ani": 77.619, "matched_fragments": 208, "total_fragments": 813, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_009911185.1", "gtdb_species": "s__14-2 sp009911185", "ani": 77.325, "matched_fragments": 223, "total_fragments": 813, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910587895.1", "gtdb_species": "s__14-2 sp910587895", "ani": 77.1399, "matched_fragments": 150, "total_fragments": 813, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910583835.1", "gtdb_species": "s__14-2 sp910583835", "ani": 76.8074, "matched_fragments": 161, "total_fragments": 813, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.325, "cell_length": 0.215, "doubling_h": null, "growth_tmp": 36.972, "optimum_tmp": 37.071, "optimum_ph": null, "genome_size": 3245697.074, "gc_content": 41.131, "coding_genes": 3227.555, "rRNA16S_genes": 6.0, "tRNA_genes": 59.583, "gram_stain": 0.95, "sporulation": 0.0, "motility": 0.5, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Petralouisia", "s__Petralouisia sp000403845" ], "_genome_taxon": [ "uncultured", "Eubacterium", "sp.", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Petralouisia", "s__Petralouisia sp000403845", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Petralouisia", "Petralouisia", "sp000403845" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }