{ "type": "genome", "identifier": "GCA_947097065.1", "organism": "Capnocytophaga sputigena", "title": "Capnocytophaga sputigena", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947097065.1", "bioproject": "PRJEB53836", "biosample": "SAMEA111493382", "wgs_master": "CAMUQS000000000.1", "refseq_category": "na", "taxid": "1019", "species_taxid": "1019", "organism_name": "Capnocytophaga sputigena", "infraspecific_name": "", "isolate": "SRR8786261_bin.13_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/28", "asm_name": "SRR8786261_bin.13_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/097/065/GCA_947097065.1_SRR8786261_bin.13_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-28", "dateModified": "2022-10-28", "datePublished": "2022-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Capnocytophaga sputigena" ], "sample_taxid": [ "1019" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.616 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 52.78, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2161831", "Number of Sequences": "432", "Longest Sequences (bp)": "19233", "N50 (bp)": "5360", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.9", "Number of CDSs": "1565", "Average Protein Length": "312.3", "Coding Ratio (%)": "67.8", "Number of rRNAs": "0", "Number of tRNAs": "13", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Capnocytophaga sputigena", "strain": "strain=NCTC11653", "accession": "GCA_900446695.1", "taxid": 1019, "species_taxid": 1019, "relation_to_type": "type", "validated": true, "ani": 95.526, "matched_fragments": 435, "total_fragments": 498, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Capnocytophaga endodontalis", "strain": "strain=ChDC OS43", "accession": "GCA_002209445.1", "taxid": 2708117, "species_taxid": 2708117, "relation_to_type": "type", "validated": true, "ani": 92.6759, "matched_fragments": 439, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga periodontitidis", "strain": "strain=p1a2", "accession": "GCA_016126015.1", "taxid": 2795027, "species_taxid": 2795027, "relation_to_type": "type", "validated": true, "ani": 92.4394, "matched_fragments": 437, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga ochracea", "strain": "strain=FDAARGOS_1468", "accession": "GCA_019930725.1", "taxid": 1018, "species_taxid": 1018, "relation_to_type": "type", "validated": true, "ani": 83.2315, "matched_fragments": 296, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga ochracea", "strain": "strain=DSM 7271", "accession": "GCA_000023285.1", "taxid": 1018, "species_taxid": 1018, "relation_to_type": "type", "validated": true, "ani": 83.2113, "matched_fragments": 299, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga leadbetteri", "strain": "strain=DSM 22902", "accession": "GCA_003054025.1", "taxid": 327575, "species_taxid": 327575, "relation_to_type": "type", "validated": true, "ani": 79.3999, "matched_fragments": 206, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga bilenii", "strain": "strain=Marseille-Q4570", "accession": "GCA_017565765.1", "taxid": 2819369, "species_taxid": 2819369, "relation_to_type": "type", "validated": true, "ani": 77.9399, "matched_fragments": 153, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga haemolytica", "strain": "strain=DSM 11385", "accession": "GCA_900115315.1", "taxid": 45243, "species_taxid": 45243, "relation_to_type": "type", "validated": true, "ani": 77.2222, "matched_fragments": 65, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga haemolytica", "strain": "strain=CCUG 32990", "accession": "GCA_001553545.1", "taxid": 45243, "species_taxid": 45243, "relation_to_type": "type", "validated": true, "ani": 77.1796, "matched_fragments": 66, "total_fragments": 498, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 52.78, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900446695.1", "gtdb_species": "s__Capnocytophaga sputigena", "ani": 95.5312, "matched_fragments": 435, "total_fragments": 498, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "96.32", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 8, "status": "conclusive" }, { "accession": "GCF_002209445.1", "gtdb_species": "s__Capnocytophaga endodontalis", "ani": 92.6396, 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"Flavobacteriaceae", "Capnocytophaga", "Capnocytophaga", "sputigena" ], "_meo": [ { "id": "MEO_0000467", "label": "oral cavity" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }