{ "type": "genome", "identifier": "GCA_947097615.1", "organism": "uncultured Neisseria sp.", "title": "uncultured Neisseria sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947097615.1", "bioproject": "PRJEB53836", "biosample": "SAMEA111493427", "wgs_master": "CAMURX000000000.1", "refseq_category": "na", "taxid": "237778", "species_taxid": "237778", "organism_name": "uncultured Neisseria sp.", "infraspecific_name": "", "isolate": "SRR8786267_bin.12_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/28", "asm_name": "SRR8786267_bin.12_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/097/615/GCA_947097615.1_SRR8786267_bin.12_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-28", "dateModified": "2022-10-28", "datePublished": "2022-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Neisseria sp." ], "sample_taxid": [ "237778" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.502 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 37.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1817320", "Number of Sequences": "263", "Longest Sequences (bp)": "31234", "N50 (bp)": "8672", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.5", "Number of CDSs": "1658", "Average Protein Length": "268.8", "Coding Ratio (%)": "73.6", "Number of rRNAs": "0", "Number of tRNAs": "15", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria bacilliformis", "strain": "strain=ATCC BAA-1200", "accession": "GCA_000194925.1", "taxid": 267212, "species_taxid": 267212, "relation_to_type": "type", "validated": true, "ani": 85.7603, "matched_fragments": 385, "total_fragments": 488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria bacilliformis", "strain": "strain=DSM 23338", "accession": "GCA_014055025.1", "taxid": 267212, "species_taxid": 267212, "relation_to_type": "type", "validated": true, "ani": 85.6105, "matched_fragments": 399, "total_fragments": 488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kingella potus", "strain": "strain=NCTC13336", "accession": "GCA_900451175.1", "taxid": 265175, "species_taxid": 265175, "relation_to_type": "type", "validated": true, "ani": 83.3735, "matched_fragments": 372, "total_fragments": 488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kingella potus", "strain": "strain=3/SID/1128", "accession": "GCA_022870985.1", "taxid": 265175, "species_taxid": 265175, "relation_to_type": "type", "validated": true, "ani": 83.3149, "matched_fragments": 372, "total_fragments": 488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria elongata subsp. glycolytica", "strain": "strain=NCTC11050", "accession": "GCA_900475815.1", "taxid": 88719, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 82.0332, "matched_fragments": 322, "total_fragments": 488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria elongata subsp. glycolytica", "strain": "strain=ATCC 29315", "accession": "GCA_000818035.1", "taxid": 88719, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 81.8487, "matched_fragments": 327, "total_fragments": 488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria sicca", "strain": "strain=DSM 17713", "accession": "GCA_014054945.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2934, "matched_fragments": 235, "total_fragments": 488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria sicca", "strain": "strain=ATCC 29256", "accession": "GCA_000174655.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2802, "matched_fragments": 232, "total_fragments": 488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_022749515.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 79.2369, "matched_fragments": 230, "total_fragments": 488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_000813705.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 79.2284, "matched_fragments": 218, "total_fragments": 488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=CCUG 2156", "accession": "GCA_021025975.1", "taxid": 483, "species_taxid": 483, "relation_to_type": "type", "validated": true, "ani": 78.6104, "matched_fragments": 169, "total_fragments": 488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria meningitidis", "strain": "strain=PartJ-Nmeningitidis-RM8376", "accession": "GCA_022869645.1", "taxid": 487, "species_taxid": 487, "relation_to_type": "type", "validated": true, "ani": 78.531, "matched_fragments": 201, "total_fragments": 488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria perflava", "strain": "strain=CCUG 17915", "accession": "GCA_023472875.1", "taxid": 33053, "species_taxid": 33053, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7027, "matched_fragments": 197, "total_fragments": 488, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 37.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002237445.1", "gtdb_species": "s__Neisseria sp002237445", "ani": 94.1679, "matched_fragments": 423, "total_fragments": 488, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.69", "min_intra_species_ani": "99.69", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014055025.1", "gtdb_species": "s__Neisseria bacilliformis", "ani": 85.5963, "matched_fragments": 400, "total_fragments": 488, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "96.96", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900451175.1", "gtdb_species": "s__Neisseria potus", "ani": 83.4179, "matched_fragments": 371, "total_fragments": 488, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900113545.1", "gtdb_species": "s__Neisseria elongata", "ani": 82.0777, "matched_fragments": 324, "total_fragments": 488, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.68", "min_intra_species_ani": "96.06", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_000227275.1", "gtdb_species": "s__Neisseria sp000227275", "ani": 79.4143, "matched_fragments": 224, "total_fragments": 488, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 96.3387, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "96.71", "mean_intra_species_af": "0.95", 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"f__Neisseriaceae", "g__Neisseria", "s__Neisseria sp947097615", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Neisseriaceae", "Neisseria", "Neisseria", "sp947097615" ], "_meo": [ { "id": "MEO_0000467", "label": "oral cavity" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }