{ "type": "genome", "identifier": "GCA_947166825.1", "organism": "uncultured Anaerovibrio sp.", "title": "uncultured Anaerovibrio sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947166825.1", "bioproject": "PRJEB56573", "biosample": "SAMEA111498709", "wgs_master": "CAMVFT000000000.1", "refseq_category": "na", "taxid": "361586", "species_taxid": "361586", "organism_name": "uncultured Anaerovibrio sp.", "infraspecific_name": "", "isolate": "SRR8387714_bin.42_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/28", "asm_name": "SRR8387714_bin.42_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/166/825/GCA_947166825.1_SRR8387714_bin.42_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-28", "dateModified": "2022-10-28", "datePublished": "2022-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Anaerovibrio sp." ], "sample_taxid": [ "361586" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.669 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.25, "contamination": 2.08, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2344400", "Number of Sequences": "174", "Longest Sequences (bp)": "61867", "N50 (bp)": "18272", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.6", "Number of CDSs": "2110", "Average Protein Length": "309.7", "Coding Ratio (%)": "83.6", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerovibrio lipolyticus", "strain": "strain=DSM 3074", "accession": "GCA_900141865.1", "taxid": 82374, "species_taxid": 82374, "relation_to_type": "type", "validated": true, "ani": 80.1507, "matched_fragments": 270, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerovibrio slackiae", "strain": "strain=WCA-693-APC-5D-A", "accession": "GCA_009695585.1", "taxid": 2652309, "species_taxid": 2652309, "relation_to_type": "type", "validated": true, "ani": 77.1462, "matched_fragments": 98, "total_fragments": 690, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.25, "contamination": 2.08, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017475925.1", "gtdb_species": "s__Anaerovibrio sp017475925", "ani": 96.8606, "matched_fragments": 524, "total_fragments": 690, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Anaerovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.54", "min_intra_species_ani": "97.54", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_002372665.1", "gtdb_species": "s__Anaerovibrio lipolyticus_C", "ani": 80.5236, "matched_fragments": 224, "total_fragments": 690, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Anaerovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "96.86", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000621545.1", "gtdb_species": "s__Anaerovibrio lipolyticus_A", "ani": 80.3267, "matched_fragments": 255, "total_fragments": 690, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Anaerovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900141865.1", "gtdb_species": "s__Anaerovibrio lipolyticus", "ani": 80.1484, "matched_fragments": 270, "total_fragments": 690, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Anaerovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.47", "min_intra_species_ani": "96.05", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_902786545.1", "gtdb_species": "s__Anaerovibrio sp902786545", "ani": 79.465, "matched_fragments": 299, "total_fragments": 690, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Anaerovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.48", "min_intra_species_ani": "96.70", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_902785445.1", "gtdb_species": "s__Anaerovibrio sp902785445", "ani": 79.3616, "matched_fragments": 236, "total_fragments": 690, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Anaerovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002100115.1", "gtdb_species": "s__Anaerovibrio sp002100115", "ani": 79.0455, "matched_fragments": 264, "total_fragments": 690, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Anaerovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000622005.1", "gtdb_species": "s__Anaerovibrio sp000622005", "ani": 78.9239, "matched_fragments": 239, "total_fragments": 690, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Anaerovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009695585.1", "gtdb_species": "s__Anaerovibrio slackiae", "ani": 77.1462, "matched_fragments": 98, "total_fragments": 690, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Anaerovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.28", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 10, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 2780232.5, "gc_content": 43.28, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_C", "c__Negativicutes", "o__Selenomonadales", "f__Selenomonadaceae", "g__Anaerovibrio", "s__Anaerovibrio sp017475925" ], "_genome_taxon": [ "uncultured", "Anaerovibrio", "sp.", "d__Bacteria", "p__Bacillota_C", "c__Negativicutes", "o__Selenomonadales", "f__Selenomonadaceae", "g__Anaerovibrio", "s__Anaerovibrio sp017475925", "Bacteria", "Bacillota", "C", "Negativicutes", "Selenomonadales", "Selenomonadaceae", "Anaerovibrio", "Anaerovibrio", "sp017475925" ], "_meo": [ { "id": "MEO_0000046", "label": "rumen" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }