{ "type": "genome", "identifier": "GCA_947167345.1", "organism": "uncultured Treponema sp.", "title": "uncultured Treponema sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947167345.1", "bioproject": "PRJEB56573", "biosample": "SAMEA111498866", "wgs_master": "CAMVHR000000000.1", "refseq_category": "na", "taxid": "162155", "species_taxid": "162155", "organism_name": "uncultured Treponema sp.", "infraspecific_name": "", "isolate": "SRR8387716_bin.39_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/28", "asm_name": "SRR8387716_bin.39_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/167/345/GCA_947167345.1_SRR8387716_bin.39_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-28", "dateModified": "2022-10-28", "datePublished": "2022-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Treponema sp." ], "sample_taxid": [ "162155" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.916 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 93.18, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", 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"below_threshold" } ], "cc_result": { "completeness": 93.18, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902766345.1", "gtdb_species": "s__Treponema_D sp902766345", "ani": 84.0538, "matched_fragments": 335, "total_fragments": 1008, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017476165.1", "gtdb_species": "s__Treponema_D sp017476165", "ani": 81.6414, "matched_fragments": 416, "total_fragments": 1008, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000619925.1", "gtdb_species": "s__Treponema_D sp000619925", "ani": 78.1101, "matched_fragments": 83, "total_fragments": 1008, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014202035.1", "gtdb_species": "s__Treponema_D rectale", "ani": 77.5647, "matched_fragments": 110, "total_fragments": 1008, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.45", "min_intra_species_ani": "97.19", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", 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