{ "type": "genome", "identifier": "GCA_947253065.1", "organism": "uncultured Corynebacterium sp.", "title": "uncultured Corynebacterium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947253065.1", "bioproject": "PRJEB56771", "biosample": "SAMEA111539096", "wgs_master": "CAMXWS000000000.1", "refseq_category": "na", "taxid": "159447", "species_taxid": "159447", "organism_name": "uncultured Corynebacterium sp.", "infraspecific_name": "", "isolate": "SRR17635580_bin.5_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/05", "asm_name": "SRR17635580_bin.5_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/253/065/GCA_947253065.1_SRR17635580_bin.5_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-05", "dateModified": "2022-11-05", "datePublished": "2022-11-05", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Corynebacterium sp." ], "sample_taxid": [ "159447" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.606 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.2, "contamination": 7.2, "strain_heterogeneity": 77.78, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2121714", "Number of Sequences": "82", "Longest Sequences (bp)": "173856", "N50 (bp)": "50854", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.8", "Number of CDSs": "1954", "Average Protein Length": "318.1", "Coding Ratio (%)": "87.9", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium appendicis", "strain": "strain=DSM 44531", "accession": "GCA_900156665.1", "taxid": 163202, "species_taxid": 163202, "relation_to_type": "type", "validated": true, "ani": 83.1777, "matched_fragments": 507, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium urinipleomorphum", "strain": "strain=Marseille-P2799", "accession": "GCA_900155535.1", "taxid": 1852380, "species_taxid": 1852380, "relation_to_type": "type", "validated": true, "ani": 82.2442, "matched_fragments": 491, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium tuscaniense", "strain": "strain=CCUG 51321T", "accession": "GCA_008693065.1", "taxid": 302449, "species_taxid": 302449, "relation_to_type": "type", "validated": true, "ani": 80.8118, "matched_fragments": 331, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ihumii", "strain": "strain=GD7", "accession": "GCA_000403725.2", "taxid": 1232427, "species_taxid": 1232427, "relation_to_type": "type", "validated": true, "ani": 78.7814, "matched_fragments": 223, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium imitans", "strain": "strain=NCTC13015", "accession": "GCA_900187215.1", "taxid": 156978, "species_taxid": 156978, "relation_to_type": "type", "validated": true, "ani": 78.7813, "matched_fragments": 231, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium imitans", "strain": "strain=DSM 44264", "accession": "GCA_000739455.1", "taxid": 156978, "species_taxid": 156978, "relation_to_type": "type", "validated": true, "ani": 78.7165, "matched_fragments": 237, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium jeddahense", "strain": "strain=JCB", "accession": "GCA_000577555.1", "taxid": 1414719, "species_taxid": 1414719, "relation_to_type": "type", "validated": true, "ani": 78.6454, "matched_fragments": 193, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium afermentans subsp. lipophilum", "strain": "strain=CCUG 32105", "accession": "GCA_015351335.1", "taxid": 144184, "species_taxid": 38286, "relation_to_type": "type", "validated": true, "ani": 78.6443, "matched_fragments": 225, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium haemomassiliense", "strain": "strain=Marseille-Q3615", "accession": "GCA_013978595.1", "taxid": 2754726, "species_taxid": 2754726, "relation_to_type": "type", "validated": true, "ani": 78.5562, "matched_fragments": 252, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium aquatimens", "strain": "strain=DSM 45632", "accession": "GCA_015752125.1", "taxid": 1190508, "species_taxid": 1190508, "relation_to_type": "type", "validated": true, "ani": 78.5497, "matched_fragments": 230, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium bouchesdurhonense", "strain": "strain=SN14", "accession": "GCA_900078305.2", "taxid": 1720192, "species_taxid": 1720192, "relation_to_type": "type", "validated": true, "ani": 78.4675, "matched_fragments": 212, "total_fragments": 665, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.2, "contamination": 7.2, "strain_heterogeneity": 77.78 }, "gtdb_result": [ { "accession": "GCF_900156665.1", "gtdb_species": "s__Corynebacterium appendicis", "ani": 83.1777, "matched_fragments": 507, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017942225.1", "gtdb_species": "s__Corynebacterium sp017942225", "ani": 83.0789, "matched_fragments": 532, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": 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"min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000143825.1", "gtdb_species": "s__Corynebacterium genitalium_A", "ani": 79.7479, "matched_fragments": 342, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900618065.1", "gtdb_species": "s__Corynebacterium sp900618065", "ani": 79.6512, "matched_fragments": 331, "total_fragments": 665, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": 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