{ "type": "genome", "identifier": "GCA_947253085.1", "organism": "Prevotella ihumii", "title": "Prevotella ihumii", "description": "derived from metagenome; incomplete metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947253085.1", "bioproject": "PRJEB56771", "biosample": "SAMEA111539040", "wgs_master": "CAMXXW000000000.1", "refseq_category": "na", "taxid": "1917878", "species_taxid": "1917878", "organism_name": "Prevotella ihumii", "infraspecific_name": "", "isolate": "SRR17635474_bin.2_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/05", "asm_name": "SRR17635474_bin.2_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/253/085/GCA_947253085.1_SRR17635474_bin.2_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from metagenome; incomplete metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-05", "dateModified": "2022-11-05", "datePublished": "2022-11-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella ihumii" ], "sample_taxid": [ "1917878" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.525 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 68.75, "contamination": 8.85, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1841859", "Number of Sequences": "241", "Longest Sequences (bp)": "40182", "N50 (bp)": "9340", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.7", "Number of CDSs": "1367", "Average Protein Length": "338.9", "Coding Ratio (%)": "75.5", "Number of rRNAs": "0", "Number of tRNAs": "17", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella ihumii", "strain": "strain=Marseille-P3385", "accession": "GCA_900155655.1", "taxid": 1917878, "species_taxid": 1917878, "relation_to_type": "type", "validated": true, "ani": 99.231, "matched_fragments": 493, "total_fragments": 505, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella disiens", "strain": "strain=NCTC11157", "accession": "GCA_900454955.1", "taxid": 28130, "species_taxid": 28130, "relation_to_type": "type", "validated": true, "ani": 79.6975, "matched_fragments": 183, "total_fragments": 505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella disiens", "strain": "strain=JCM 6334", "accession": "GCA_000613345.1", "taxid": 28130, "species_taxid": 28130, "relation_to_type": "type", "validated": true, "ani": 79.6391, "matched_fragments": 175, "total_fragments": 505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella disiens", "strain": "strain=ATCC 29426", "accession": "GCA_000467875.1", "taxid": 28130, "species_taxid": 28130, "relation_to_type": "type", "validated": true, "ani": 79.6356, "matched_fragments": 170, "total_fragments": 505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 78.9869, "matched_fragments": 180, "total_fragments": 505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_001953955.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 78.9782, "matched_fragments": 182, "total_fragments": 505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=NCTC13070", "accession": "GCA_900455005.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 78.9685, "matched_fragments": 182, "total_fragments": 505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=DSM 20706", "accession": "GCA_000439065.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 78.8888, "matched_fragments": 181, "total_fragments": 505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella aurantiaca", "strain": "strain=JCM 15754", "accession": "GCA_000614025.1", "taxid": 596085, "species_taxid": 596085, "relation_to_type": "type", "validated": true, "ani": 77.8986, "matched_fragments": 145, "total_fragments": 505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_018128145.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 77.3861, "matched_fragments": 82, "total_fragments": 505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_001262015.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 77.3505, "matched_fragments": 83, "total_fragments": 505, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 68.75, "contamination": 8.85, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900155655.1", "gtdb_species": "s__Prevotella ihumii", "ani": 99.231, "matched_fragments": 493, "total_fragments": 505, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000613345.1", "gtdb_species": "s__Prevotella disiens", "ani": 79.6235, "matched_fragments": 175, "total_fragments": 505, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.82", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001953955.1", "gtdb_species": "s__Prevotella intermedia", "ani": 78.9782, "matched_fragments": 182, "total_fragments": 505, "gtdb_taxonomy": 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.23", "min_intra_species_ani": "99.23", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000613945.1", "gtdb_species": "s__Prevotella falsenii", "ani": 78.1706, "matched_fragments": 177, "total_fragments": 505, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000688375.1", "gtdb_species": "s__Prevotella sp000688375", "ani": 77.95, "matched_fragments": 145, "total_fragments": 505, "gtdb_taxonomy": 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