{
    "type": "genome",
    "identifier": "GCA_947253455.1",
    "organism": "uncultured Lactobacillus sp.",
    "title": "uncultured Lactobacillus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_947253455.1",
        "bioproject": "PRJEB56771",
        "biosample": "SAMEA111539059",
        "wgs_master": "CAMXZP000000000.1",
        "refseq_category": "na",
        "taxid": "153152",
        "species_taxid": "153152",
        "organism_name": "uncultured Lactobacillus sp.",
        "infraspecific_name": "",
        "isolate": "SRR17635493_bin.1_metaWRAP_v1.3_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/04",
        "asm_name": "SRR17635493_bin.1_metaWRAP_v1.3_MAG",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/253/455/GCA_947253455.1_SRR17635493_bin.1_metaWRAP_v1.3_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-04",
    "dateModified": "2022-11-04",
    "datePublished": "2022-11-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Lactobacillus sp."
        ],
        "sample_taxid": [
            "153152"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.441 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 30.87,
        "contamination": 12.5,
        "strain_heterogeneity": 25.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1530928",
        "Number of Sequences": "779",
        "Longest Sequences (bp)": "26240",
        "N50 (bp)": "2063",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.8",
        "Number of CDSs": "1096",
        "Average Protein Length": "236.0",
        "Coding Ratio (%)": "50.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "9",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lactobacillus crispatus",
                "strain": "strain=ATCC 33820",
                "accession": "GCA_018987235.1",
                "taxid": 47770,
                "species_taxid": 47770,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 96.8806,
                "matched_fragments": 60,
                "total_fragments": 108,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus crispatus",
                "strain": "strain=NCK2488",
                "accession": "GCA_008694755.1",
                "taxid": 47770,
                "species_taxid": 47770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.8755,
                "matched_fragments": 59,
                "total_fragments": 108,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus crispatus",
                "strain": "strain=ATCC 33820",
                "accession": "GCA_002088015.1",
                "taxid": 47770,
                "species_taxid": 47770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.8054,
                "matched_fragments": 60,
                "total_fragments": 108,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus crispatus",
                "strain": "strain=DSM 20584",
                "accession": "GCA_001434005.1",
                "taxid": 47770,
                "species_taxid": 47770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.763,
                "matched_fragments": 60,
                "total_fragments": 108,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 30.87,
            "contamination": 12.5,
            "strain_heterogeneity": 25.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_018987235.1",
                "gtdb_species": "s__Lactobacillus crispatus",
                "ani": 96.8806,
                "matched_fragments": 60,
                "total_fragments": 108,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.75",
                "min_intra_species_ani": "96.25",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 161,
                "status": "conclusive"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.148,
        "cell_length": 0.354,
        "doubling_h": -0.086,
        "growth_tmp": 32.808,
        "optimum_tmp": 31.646,
        "optimum_ph": 6.027,
        "genome_size": 2295637.558,
        "gc_content": 40.393,
        "coding_genes": 2119.007,
        "rRNA16S_genes": 5.074,
        "tRNA_genes": 63.614,
        "gram_stain": 1.0,
        "sporulation": 0.009,
        "motility": 0.08,
        "range_salinity": 0.0,
        "facultative_respiration": 0.155,
        "anaerobic_respiration": 0.175,
        "aerobic_respiration": 0.668,
        "mesophilic_range_tmp": 0.977,
        "thermophilic_range_tmp": 0.022,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.983,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.016,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Lactobacillus",
        "s__Lactobacillus crispatus"
    ],
    "_genome_taxon": [
        "uncultured",
        "Lactobacillus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Lactobacillus",
        "s__Lactobacillus crispatus",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Lactobacillaceae",
        "Lactobacillus",
        "Lactobacillus",
        "crispatus"
    ],
    "_meo": [
        {
            "id": "MEO_0000523",
            "label": "vagina"
        }
    ],
    "quality": 1,
    "quality_label": "\u2b50\ufe0f"
}