{ "type": "genome", "identifier": "GCA_947259565.1", "organism": "uncultured Sphingomonadaceae bacterium", "title": "uncultured Sphingomonadaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF VIENNA", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947259565.1", "bioproject": "PRJEB54670", "biosample": "SAMEA110353669", "wgs_master": "CAMYMT000000000.1", "refseq_category": "na", "taxid": "169976", "species_taxid": "169976", "organism_name": "uncultured Sphingomonadaceae bacterium", "infraspecific_name": "", "isolate": "Biocath_Alpha_29", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/05", "asm_name": "ERZ12284415", "submitter": "UNIVERSITY OF VIENNA", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/259/565/GCA_947259565.1_ERZ12284415", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-05", "dateModified": "2022-11-05", "datePublished": "2022-11-05", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Sphingomonadaceae bacterium" ], "sample_taxid": [ "169976" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.902 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 12.5, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3193383", "Number of Sequences": "44", "Longest Sequences (bp)": "388952", "N50 (bp)": "124886", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.5", "Number of CDSs": "3141", "Average Protein Length": "306.5", "Coding Ratio (%)": "90.4", "Number of rRNAs": "1", "Number of tRNAs": "56", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parasphingopyxis lamellibrachiae", "strain": "strain=DSM 26725", "accession": "GCA_003385775.1", "taxid": 680125, "species_taxid": 680125, "relation_to_type": "type", "validated": true, "ani": 81.9669, "matched_fragments": 236, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parasphingopyxis algicola", "strain": "strain=JCM 31719", "accession": "GCA_013378075.1", "taxid": 2026624, "species_taxid": 2026624, "relation_to_type": "type", "validated": true, "ani": 79.1927, "matched_fragments": 241, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parasphingopyxis marina", "strain": "strain=GrpM-11", "accession": "GCA_014237875.1", "taxid": 2761622, "species_taxid": 2761622, "relation_to_type": "type", "validated": true, "ani": 78.3194, "matched_fragments": 215, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium ferulae", "strain": "strain=SX2RGS8", "accession": "GCA_003660445.1", "taxid": 1854641, "species_taxid": 1854641, "relation_to_type": "type", "validated": true, "ani": 77.9126, "matched_fragments": 173, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium atlanticum", "strain": "strain=26DY36", "accession": "GCA_001008165.2", "taxid": 1267766, "species_taxid": 1267766, "relation_to_type": "type", "validated": true, "ani": 77.9115, "matched_fragments": 237, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium atlanticum", "strain": "strain=DSM 100738", "accession": "GCA_014199315.1", "taxid": 1267766, "species_taxid": 1267766, "relation_to_type": "type", "validated": true, "ani": 77.884, "matched_fragments": 240, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 77.8493, "matched_fragments": 255, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caenibius tardaugens", "strain": "strain=NBRC 16725", "accession": "GCA_003860345.1", "taxid": 169176, "species_taxid": 169176, "relation_to_type": "type", "validated": true, "ani": 77.8033, "matched_fragments": 212, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=KCTC 22370", "accession": "GCA_001028625.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 77.777, "matched_fragments": 226, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caenibius tardaugens", "strain": "strain=NBRC 16725", "accession": "GCA_000466945.1", "taxid": 169176, "species_taxid": 169176, "relation_to_type": "type", "validated": true, "ani": 77.7159, "matched_fragments": 212, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=DSM 21428", "accession": "GCA_001461885.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 77.6589, "matched_fragments": 231, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium marinum", "strain": "strain=CGMCC 1.12918", "accession": "GCA_014640055.1", "taxid": 1514948, "species_taxid": 1514948, "relation_to_type": "type", "validated": true, "ani": 77.576, "matched_fragments": 196, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium marinum", "strain": "strain=DSM 29043", "accession": "GCA_013408095.1", "taxid": 1514948, "species_taxid": 1514948, "relation_to_type": "type", "validated": true, "ani": 77.5751, "matched_fragments": 199, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 77.5021, "matched_fragments": 224, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella deserti", "strain": "strain=CGMCC 1.15959", "accession": "GCA_014644315.1", "taxid": 2035528, "species_taxid": 2035528, "relation_to_type": "type", "validated": true, "ani": 77.4836, "matched_fragments": 155, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 77.4747, "matched_fragments": 225, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus gelatinilyticus", "strain": "strain=1NDH52", "accession": "GCA_018398395.1", "taxid": 2835536, "species_taxid": 2835536, "relation_to_type": "type", "validated": true, "ani": 77.4717, "matched_fragments": 200, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 77.4674, "matched_fragments": 214, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania nanhaisediminis", "strain": "strain=CGMCC 1.7715", "accession": "GCA_900115585.1", "taxid": 604088, "species_taxid": 604088, "relation_to_type": "type", "validated": true, "ani": 77.4617, "matched_fragments": 195, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 77.4515, "matched_fragments": 218, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium lentum", "strain": "strain=NBRC 107847", "accession": "GCA_001590965.1", "taxid": 145287, "species_taxid": 145287, "relation_to_type": "type", "validated": true, "ani": 77.4376, "matched_fragments": 244, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter luteus", "strain": "strain=KA37", "accession": "GCA_001010945.1", "taxid": 1581420, "species_taxid": 1581420, "relation_to_type": "type", "validated": true, "ani": 77.4311, "matched_fragments": 182, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium olei", "strain": "strain=TW-4", "accession": "GCA_012927405.1", "taxid": 2728851, "species_taxid": 2728851, "relation_to_type": "type", "validated": true, "ani": 77.4112, "matched_fragments": 204, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteripontixanthobacter maritimus", "strain": "strain=HME9302", "accession": "GCA_003340475.1", "taxid": 2161824, "species_taxid": 2161824, "relation_to_type": "type", "validated": true, "ani": 77.3328, "matched_fragments": 142, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas changnyeongensis", "strain": "strain=C33", "accession": "GCA_009913435.1", "taxid": 2698679, "species_taxid": 2698679, "relation_to_type": "type", "validated": true, "ani": 77.2847, "matched_fragments": 162, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiamenensis", "strain": "strain=1XM1-15A", "accession": "GCA_019711495.1", "taxid": 2867237, "species_taxid": 2867237, "relation_to_type": "type", "validated": true, "ani": 77.2061, "matched_fragments": 194, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium xixiisoli", "strain": "strain=S36", "accession": "GCA_009827305.1", "taxid": 1476466, "species_taxid": 1476466, "relation_to_type": "type", "validated": true, "ani": 77.1813, "matched_fragments": 203, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter cryptus", "strain": "strain=DSM 12079", "accession": "GCA_000422985.1", "taxid": 196588, "species_taxid": 196588, "relation_to_type": "type", "validated": true, "ani": 77.176, "matched_fragments": 198, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter donghaensis", "strain": "strain=DSM 16220", "accession": "GCA_002155425.1", "taxid": 267135, "species_taxid": 267135, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1752, "matched_fragments": 204, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=JCM 10282", "accession": "GCA_009828055.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 77.1625, "matched_fragments": 176, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium ginsenosidimutans", "strain": "strain=FW-6", "accession": "GCA_007954425.1", "taxid": 1176536, "species_taxid": 1176536, "relation_to_type": "type", "validated": true, "ani": 77.1522, "matched_fragments": 185, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter rhizosphaerae", "strain": "strain=GH3-10", "accession": "GCA_009807005.1", "taxid": 2691582, "species_taxid": 2691582, "relation_to_type": "type", "validated": true, "ani": 77.1093, "matched_fragments": 162, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas fennica", "strain": "strain=K101", "accession": "GCA_003034225.1", "taxid": 114404, "species_taxid": 114404, "relation_to_type": "type", "validated": true, "ani": 77.0911, "matched_fragments": 171, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter rubeus", "strain": "strain=KMU-140", "accession": "GCA_014705715.1", "taxid": 2760803, "species_taxid": 2760803, "relation_to_type": "type", "validated": true, "ani": 76.993, "matched_fragments": 157, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas suaedae", "strain": "strain=XS-10", "accession": "GCA_007833215.1", "taxid": 2599297, "species_taxid": 2599297, "relation_to_type": "type", "validated": true, "ani": 76.9776, "matched_fragments": 159, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas oleivorans", "strain": "strain=FW-11", "accession": "GCA_003050615.1", "taxid": 1735121, "species_taxid": 1735121, "relation_to_type": "type", "validated": true, "ani": 76.88, "matched_fragments": 143, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Altererythrobacter lutimaris", "strain": "strain=JGD-16", "accession": "GCA_013371495.1", "taxid": 2743979, "species_taxid": 2743979, "relation_to_type": "type", "validated": true, "ani": 76.8462, "matched_fragments": 102, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas alpina", "strain": "strain=DSM 22537", "accession": "GCA_025370095.1", "taxid": 653931, "species_taxid": 653931, "relation_to_type": "type", "validated": true, "ani": 76.7424, "matched_fragments": 175, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas morindae", "strain": "strain=NBD5", "accession": "GCA_023822065.1", "taxid": 1541170, "species_taxid": 1541170, "relation_to_type": "type", "validated": true, "ani": 76.651, "matched_fragments": 146, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas profundi", "strain": "strain=LMO-1", "accession": "GCA_009739515.1", "taxid": 2681549, "species_taxid": 2681549, "relation_to_type": "type", "validated": true, "ani": 76.5981, "matched_fragments": 151, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 12.5, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003385775.1", "gtdb_species": "s__Parasphingopyxis lamellibrachiae", "ani": 82.0314, "matched_fragments": 234, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Parasphingopyxis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905479515.1", "gtdb_species": "s__Parasphingopyxis sp905479515", "ani": 81.7848, "matched_fragments": 169, "total_fragments": 1042, "gtdb_taxonomy": 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