{ "type": "genome", "identifier": "GCA_947369355.1", "organism": "uncultured Helicobacter sp.", "title": "uncultured Helicobacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947369355.1", "bioproject": "PRJEB57414", "biosample": "SAMEA112148161", "wgs_master": "CANBLQ000000000.1", "refseq_category": "na", "taxid": "175537", "species_taxid": "175537", "organism_name": "uncultured Helicobacter sp.", "infraspecific_name": "", "isolate": "SRR16348861_bin.6_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/27", "asm_name": "SRR16348861_bin.6_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/369/355/GCA_947369355.1_SRR16348861_bin.6_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-27", "dateModified": "2022-11-27", "datePublished": "2022-11-27", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Helicobacter sp." ], "sample_taxid": [ "175537" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.436 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 77.08, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1548343", "Number of Sequences": "164", "Longest Sequences (bp)": "56174", "N50 (bp)": "17791", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.9", "Number of CDSs": "1439", "Average Protein Length": "294.9", "Coding Ratio (%)": "82.2", "Number of rRNAs": "0", "Number of tRNAs": "24", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Helicobacter japonicus", "strain": "strain=MIT 01-6451", "accession": "GCA_000762845.2", "taxid": 425400, "species_taxid": 425400, "relation_to_type": "type", "validated": true, "ani": 82.7688, "matched_fragments": 329, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter labetoulli", "strain": "strain=48519", "accession": "GCA_003670275.1", "taxid": 2315333, "species_taxid": 2315333, "relation_to_type": "type", "validated": true, "ani": 78.5766, "matched_fragments": 203, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter cinaedi", "strain": "strain=ATCC BAA-847", "accession": "GCA_000349975.1", "taxid": 213, "species_taxid": 213, "relation_to_type": "type", "validated": true, "ani": 78.428, "matched_fragments": 217, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter cinaedi", "strain": "strain=CCUG 18818", "accession": "GCA_000155475.1", "taxid": 213, "species_taxid": 213, "relation_to_type": "type", "validated": true, "ani": 78.3235, "matched_fragments": 205, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter cinaedi", "strain": "strain=DSM 5359", "accession": "GCA_017979495.1", "taxid": 213, "species_taxid": 213, "relation_to_type": "type", "validated": true, "ani": 78.2198, "matched_fragments": 209, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter cinaedi", "strain": "strain=CCUG 18818", "accession": "GCA_003215615.1", "taxid": 213, "species_taxid": 213, "relation_to_type": "type", "validated": true, "ani": 78.167, "matched_fragments": 204, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter jaachi", "strain": "strain=MIT 09-6949", "accession": "GCA_000763135.2", "taxid": 1677920, "species_taxid": 1677920, "relation_to_type": "type", "validated": true, "ani": 78.0888, "matched_fragments": 165, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter marmotae", "strain": "strain=MIT 98-6070", "accession": "GCA_003364255.1", "taxid": 152490, "species_taxid": 152490, "relation_to_type": "type", "validated": true, "ani": 78.0531, "matched_fragments": 181, "total_fragments": 435, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 77.08, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000007905.1", "gtdb_species": "s__Helicobacter_C hepaticus", "ani": 99.9399, "matched_fragments": 434, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "98.74", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_001460635.1", "gtdb_species": "s__Helicobacter_C typhlonius", "ani": 84.2071, "matched_fragments": 260, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_000762845.2", "gtdb_species": "s__Helicobacter_C japonicus", "ani": 82.7438, "matched_fragments": 330, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_910577135.1", "gtdb_species": "s__Helicobacter_C sp910577135", "ani": 78.8349, "matched_fragments": 211, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000765825.2", "gtdb_species": "s__Helicobacter_C magdeburgensis", "ani": 78.651, "matched_fragments": 207, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.93", "min_intra_species_ani": "95.65", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003670275.1", "gtdb_species": "s__Helicobacter_C labetoulli", "ani": 78.5766, "matched_fragments": 203, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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1, "status": "-" }, { "accession": "GCF_003364255.1", "gtdb_species": "s__Helicobacter_C marmotae", "ani": 78.0531, "matched_fragments": 181, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000765665.2", "gtdb_species": "s__Helicobacter_C sp000765665", "ani": 77.412, "matched_fragments": 152, "total_fragments": 435, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] 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