{ "type": "genome", "identifier": "GCA_947369595.1", "organism": "uncultured Muribaculaceae bacterium", "title": "uncultured Muribaculaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_947369595.1", "bioproject": "PRJEB57414", "biosample": "SAMEA112148138", "wgs_master": "CANBLM000000000.1", "refseq_category": "na", "taxid": "2301481", "species_taxid": "2301481", "organism_name": "uncultured Muribaculaceae bacterium", "infraspecific_name": "", "isolate": "SRR16348849_bin.8_metawrap_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/27", "asm_name": "SRR16348849_bin.8_metawrap_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/947/369/595/GCA_947369595.1_SRR16348849_bin.8_metawrap_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-27", "dateModified": "2022-11-27", "datePublished": "2022-11-27", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Muribaculaceae bacterium" ], "sample_taxid": [ "2301481" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.474 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 71.01, "contamination": 6.25, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1630469", "Number of Sequences": "323", "Longest Sequences (bp)": "29825", "N50 (bp)": "5215", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.0", "Number of CDSs": "1119", "Average Protein Length": "326.2", "Coding Ratio (%)": "67.2", "Number of rRNAs": "0", "Number of tRNAs": "13", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paramuribaculum intestinale", "strain": "strain=DSM 100749", "accession": "GCA_003024925.1", "taxid": 2094151, "species_taxid": 2094151, "relation_to_type": "type", "validated": true, "ani": 98.5052, "matched_fragments": 329, "total_fragments": 381, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Duncaniella muris", "strain": "strain=DSM 103720", "accession": "GCA_003024805.1", "taxid": 2094150, "species_taxid": 2094150, "relation_to_type": "type", "validated": true, "ani": 78.1288, "matched_fragments": 50, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muribaculum intestinale", "strain": "strain=YL27", "accession": "GCA_002201515.1", "taxid": 1796646, "species_taxid": 1796646, "relation_to_type": "type", "validated": true, "ani": 77.2687, "matched_fragments": 53, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muribaculum intestinale", "strain": "strain=YL27", "accession": "GCA_016696845.1", "taxid": 1796646, "species_taxid": 1796646, "relation_to_type": "type", "validated": true, "ani": 77.2362, "matched_fragments": 55, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muribaculum intestinale", "strain": "strain=YL27", "accession": "GCA_001688845.2", "taxid": 1796646, "species_taxid": 1796646, "relation_to_type": "type", "validated": true, "ani": 77.2105, "matched_fragments": 52, "total_fragments": 381, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 71.01, "contamination": 6.25, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003024925.1", "gtdb_species": "s__Paramuribaculum intestinale", "ani": 98.5052, "matched_fragments": 329, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Paramuribaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "97.83", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 16, "status": "conclusive" }, { "accession": "GCA_011959405.1", "gtdb_species": "s__UBA3263 sp001689615", "ani": 85.7535, "matched_fragments": 50, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__UBA3263", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "99.09", "mean_intra_species_af": "0.70", "min_intra_species_af": "0.66", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCA_009775605.1", "gtdb_species": "s__Paramuribaculum sp009775605", "ani": 78.0759, "matched_fragments": 61, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Paramuribaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.73", "min_intra_species_ani": "99.73", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_910576785.1", "gtdb_species": "s__Duncaniella sp910576785", "ani": 77.9284, "matched_fragments": 64, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910579675.1", "gtdb_species": "s__Paramuribaculum sp910579675", "ani": 77.8475, "matched_fragments": 85, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Paramuribaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014802045.1", "gtdb_species": "s__Paramuribaculum sp014802045", "ani": 77.7058, "matched_fragments": 80, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Paramuribaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "98.31", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.73", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_910587425.1", "gtdb_species": "s__Paramuribaculum sp910587425", "ani": 77.6386, "matched_fragments": 94, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Paramuribaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002493945.1", "gtdb_species": "s__CAG-873 sp002493945", "ani": 77.4766, "matched_fragments": 59, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.61", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.88", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_001689495.1", "gtdb_species": "s__Duncaniella sp001689495", "ani": 77.4288, "matched_fragments": 73, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.23", "min_intra_species_ani": "99.23", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002201515.1", "gtdb_species": "s__Muribaculum intestinale", "ani": 77.2687, "matched_fragments": 53, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Muribaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.09", "min_intra_species_ani": "97.90", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.80", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCA_004102805.1", "gtdb_species": "s__UBA7173 sp004102805", "ani": 77.2219, "matched_fragments": 54, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__UBA7173", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.86", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_001689535.1", "gtdb_species": "s__Paramuribaculum sp001689535", "ani": 77.215, "matched_fragments": 79, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Paramuribaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.84", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_905210435.1", "gtdb_species": "s__UBA7173 sp905210435", "ani": 77.1777, "matched_fragments": 60, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__UBA7173", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910577355.1", "gtdb_species": "s__CAG-873 sp910577355", "ani": 77.0462, "matched_fragments": 52, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910589055.1", "gtdb_species": "s__CAG-873 sp910589055", "ani": 76.3724, "matched_fragments": 52, "total_fragments": 381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-873", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": 3306764.5, "gc_content": 50.1, "coding_genes": 2641.0, "rRNA16S_genes": null, "tRNA_genes": 54.0, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Muribaculaceae", "g__Paramuribaculum", "s__Paramuribaculum intestinale" ], "_genome_taxon": [ "uncultured", "Muribaculaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Muribaculaceae", "g__Paramuribaculum", "s__Paramuribaculum intestinale", "Bacteria", "Bacteroidota", "Bacteroidia", "Bacteroidales", "Muribaculaceae", "Paramuribaculum", "Paramuribaculum", "intestinale" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }